Equivalence class NR_4.0_11818.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5DM6|1|Y (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF00001 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-ray diffraction | 2.9 | 2015-11-11 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_11818.1 | NR_4.0_55100.2 | 6.0 | (1) 5DM6|1|Y | (0) | (21) 1NKW|1|9, 1NWX|1|9, 1NWY|1|9, 1SM1|1|9, 1XBP|1|9, 1Y69|1|9, 2ZJP|1|Z, 2ZJQ|1|Y, 2ZJR|1|Y, 3CF5|1|Z, 3DLL|1|Z, 3FWO|1|B, 3JQ4|1|B, 3PIO|1|Y, 3PIP|1|Y, 4IO9|1|Y, 4IOA|1|Y, 4IOC|1|Y, 4U67|1|Y, 4WFN|1|Y, 5DM7|1|Y |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_11818.1 | NR_4.0_45748.1 | 7.0 | (1) 5DM6|1|Y | (0) | (21) 1NKW|1|9, 1NWX|1|9, 1NWY|1|9, 1SM1|1|9, 1XBP|1|9, 1Y69|1|9, 2ZJP|1|Z, 2ZJQ|1|Y, 2ZJR|1|Y, 3CF5|1|Z, 3DLL|1|Z, 3FWO|1|B, 3JQ4|1|B, 3PIO|1|Y, 3PIP|1|Y, 4IO9|1|Y, 4IOA|1|Y, 4IOC|1|Y, 4U67|1|Y, 4WFN|1|Y, 5DM7|1|Y |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5DM6|1|Y | Title: Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.9 | 122 |
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