Equivalence class NR_4.0_11433.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1NLC|1|B+ 1NLC|1|A (rep) | HIV-1 DIS(MAL) genomic RNA | HIV-1 DIS(Mal) duplex Zn-soaked | X-ray diffraction | 1.85 | 2003-05-13 | ||||
| 2 | 1Y99|1|A+ 1Y99|1|B | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 subtype A DIS RNA duplex | X-ray diffraction | 2.4 | 2004-12-21 | ||||
| 3 | 1WVD|1|B+ 1WVD|1|A | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 Dis(Mal) Duplex CoCl2-Soaked | X-ray diffraction | 2.93 | 2004-12-21 | ||||
| 4 | 1O3Z|1|B+ 1O3Z|1|A | HIV-1 DIS(MAL) GENOMIC RNA | HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED | X-ray diffraction | 2.65 | 2003-05-27 | ||||
| 5 | 1Y73|1|B+ 1Y73|1|A | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 Dis(Mal) Duplex Pt-Soaked | X-ray diffraction | 2.9 | 2004-12-21 | ||||
| 6 | 1Y95|1|B+ 1Y95|1|A | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 Dis(Mal) Duplex Pb-Soaked | X-ray diffraction | 2.8 | 2004-12-21 | ||||
| 7 | 1Y6S|1|B+ 1Y6S|1|A | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS(Mal) duplex Ba-soaked | X-ray diffraction | 2.9 | 2004-12-21 | ||||
| 8 | 462D|1|B+ 462D|1|A | RNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3') | CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE | X-ray diffraction | 2.3 | 1999-12-02 | ||||
| 9 | 1Y6T|1|B+ 1Y6T|1|A | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 Dis(Mal) Duplex Co Hexamine-Soaked | X-ray diffraction | 2.6 | 2004-12-21 | ||||
| 10 | 1Y90|1|B+ 1Y90|1|A | 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 Dis(Mal) Duplex Mn-Soaked | X-ray diffraction | 3.08 | 2004-12-21 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_11433.1 | NR_all_59443.1 | 5.0 | (10) 1Y73|1|B+1Y73|1|A, 1WVD|1|B+1WVD|1|A, 462D|1|B+462D|1|A, 1Y95|1|B+1Y95|1|A, 1Y6S|1|B+1Y6S|1|A, 1Y6T|1|B+1Y6T|1|A, 1O3Z|1|B+1O3Z|1|A, 1Y99|1|A+1Y99|1|B, 1Y90|1|B+1Y90|1|A, 1NLC|1|B+1NLC|1|A | (0) | (27) 2QEK|1|A+2QEK|1|B, 1Y3O|1|A+1Y3O|1|B, 2OIY|1|A+2OIY|1|B, 1JU1|1|A+1JU1|1|B, 2B8R|1|A+2B8R|1|B, 1ZCI|1|A+1ZCI|1|B, 2FCZ|1|C+2FCZ|1|D, 1K9W|1|C, 2FCY|1|A+2FCY|1|B, 1XPE|1|A+1XPE|1|B, 3DVV|1|A+3DVV|1|B, 2OIJ|1|A+2OIJ|1|B, 2FCX|1|A+2FCX|1|B, 1YXP|1|A+1YXP|1|B, 1XP7|1|A+1XP7|1|B, 1JTJ|1|A, 2OJ0|1|A+2OJ0|1|B, 2FCZ|1|A+2FCZ|1|B, 1ZCI|1|C+1ZCI|1|D, 1XPF|1|A+1XPF|1|B, 1K9W|1|B, 3C44|1|A+3C44|1|B, 2FD0|1|A+2FD0|1|B, 2B8S|1|A+2B8S|1|B, 1Y3S|1|A+1Y3S|1|B, 1K9W|1|D, 3FAR|1|A+3FAR|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_11433.1 | NR_4.0_98093.1 | 6.0 | (1) 1NLC|1|B+1NLC|1|A | (9) 1O3Z|1|B+1O3Z|1|A, 1WVD|1|B+1WVD|1|A, 1Y6S|1|B+1Y6S|1|A, 1Y6T|1|B+1Y6T|1|A, 1Y73|1|B+1Y73|1|A, 1Y90|1|B+1Y90|1|A, 1Y95|1|B+1Y95|1|A, 1Y99|1|A+1Y99|1|B, 462D|1|B+462D|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1NLC|1|B+1NLC|1|A | Title: HIV-1 DIS(Mal) duplex Zn-soaked | X-RAY DIFFRACTION | 1.85 | 26 | ||
| 2 | 1O3Z|1|B+1O3Z|1|A | Title: HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED | X-RAY DIFFRACTION | 2.65 | 26 | ||
| 3 | 462D|1|B+462D|1|A | Title: CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE | X-RAY DIFFRACTION | 2.3 | 26 | ||
| 4 | 1Y95|1|B+1Y95|1|A | Title: HIV-1 Dis(Mal) Duplex Pb-Soaked | X-RAY DIFFRACTION | 2.8 | 26 | ||
| 5 | 1Y6S|1|B+1Y6S|1|A | Title: HIV-1 DIS(Mal) duplex Ba-soaked | X-RAY DIFFRACTION | 2.9 | 26 | ||
| 6 | 1Y6T|1|B+1Y6T|1|A | Title: HIV-1 Dis(Mal) Duplex Co Hexamine-Soaked | X-RAY DIFFRACTION | 2.6 | 26 | ||
| 7 | 1Y73|1|B+1Y73|1|A | Title: HIV-1 Dis(Mal) Duplex Pt-Soaked | X-RAY DIFFRACTION | 2.9 | 26 | ||
| 8 | 1WVD|1|B+1WVD|1|A | Title: HIV-1 Dis(Mal) Duplex CoCl2-Soaked | X-RAY DIFFRACTION | 2.93 | 26 | ||
| 9 | 1Y90|1|B+1Y90|1|A | Title: HIV-1 Dis(Mal) Duplex Mn-Soaked | X-RAY DIFFRACTION | 3.08 | 25 | ||
| 10 | 1Y99|1|A+1Y99|1|B | Title: HIV-1 subtype A DIS RNA duplex | X-RAY DIFFRACTION | 2.4 | 26 |
Coloring options: