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Equivalence class NR_4.0_09611.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V88|1|A5+ 4V88|1|A8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
24V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
34U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
44U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
53JCT|1|1+ 3JCT|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
65GAK|1|1+ 5GAK|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.882016-02-24

Release history

Release6.0
Date2017-04-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_09611.1NR_4.0_26492.26.0(6) 4U4U|1|5+4U4U|1|8, 3JCT|1|1+3JCT|1|2, 4V88|1|A5+4V88|1|A8, 4V88|1|A1+4V88|1|A4, 4U4U|1|1+4U4U|1|4, 5GAK|1|1+5GAK|1|4(0) (44) 4U52|1|1+4U52|1|4, 4U4Y|1|1+4U4Y|1|4, 5FCJ|1|1+5FCJ|1|4, 4U4Q|1|1+4U4Q|1|4, 4U3N|1|1+4U3N|1|4, 4U56|1|1+4U56|1|4, 5I4L|1|1+5I4L|1|4, 5APN|1|5+5APN|1|8, 4U4Z|1|5+4U4Z|1|8, 4U4O|1|5+4U4O|1|8, 5APO|1|5+5APO|1|8, 4U3U|1|5+4U3U|1|8, 5FCJ|1|5+5FCJ|1|8, 4U52|1|5+4U52|1|8, 5DC3|1|5+5DC3|1|8, 4U56|1|5+4U56|1|8, 4U4R|1|1+4U4R|1|4, 4U3U|1|1+4U3U|1|4, 4U6F|1|1+4U6F|1|4, 4U3M|1|1+4U3M|1|4, 5DC3|1|1+5DC3|1|4, 4U50|1|1+4U50|1|4, 4V7R|1|B1+4V7R|1|B3, 4U53|1|1+4U53|1|4, 4U4Y|1|5+4U4Y|1|8, 4U4N|1|5+4U4N|1|8, 4U53|1|5+4U53|1|8, 5FCI|1|5+5FCI|1|8, 4U6F|1|5+4U6F|1|8, 4U4R|1|5+4U4R|1|8, 4U55|1|5+4U55|1|8, 4U50|1|5+4U50|1|8, 4U51|1|1+4U51|1|4, 4U55|1|1+4U55|1|4, 4U4O|1|1+4U4O|1|4, 4U51|1|5+4U51|1|8, 4U3N|1|5+4U3N|1|8, 4U4Z|1|1+4U4Z|1|4, 4U4Q|1|5+4U4Q|1|8, 5I4L|1|5+5I4L|1|8, 4U4N|1|1+4U4N|1|4, 5FCI|1|1+5FCI|1|4, 4U3M|1|5+4U3M|1|8, 4V7R|1|D1+4V7R|1|D3

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_09611.1NR_4.0_13062.17.0(6) 4V88|1|A5+4V88|1|A8, 4U4U|1|5+4U4U|1|8, 3JCT|1|1+3JCT|1|2, 4U4U|1|1+4U4U|1|4, 5GAK|1|1+5GAK|1|4, 4V88|1|A1+4V88|1|A4(0) (44) 4U4Y|1|5+4U4Y|1|8, 4U52|1|1+4U52|1|4, 4U6F|1|1+4U6F|1|4, 4U6F|1|5+4U6F|1|8, 5FCI|1|1+5FCI|1|4, 4U3N|1|1+4U3N|1|4, 4U3N|1|5+4U3N|1|8, 4U4Q|1|1+4U4Q|1|4, 4U50|1|1+4U50|1|4, 4U50|1|5+4U50|1|8, 4U55|1|1+4U55|1|4, 5APN|1|5+5APN|1|8, 5APO|1|5+5APO|1|8, 5I4L|1|5+5I4L|1|8, 4U4N|1|1+4U4N|1|4, 4U4Y|1|1+4U4Y|1|4, 4U51|1|5+4U51|1|8, 4U56|1|5+4U56|1|8, 5DC3|1|5+5DC3|1|8, 4U3M|1|5+4U3M|1|8, 4U4O|1|5+4U4O|1|8, 4U4Z|1|5+4U4Z|1|8, 4U53|1|5+4U53|1|8, 4V7R|1|D1+4V7R|1|D3, 5I4L|1|1+5I4L|1|4, 4U3U|1|5+4U3U|1|8, 4U4R|1|5+4U4R|1|8, 4U51|1|1+4U51|1|4, 4U56|1|1+4U56|1|4, 5DC3|1|1+5DC3|1|4, 4U3M|1|1+4U3M|1|4, 4U4O|1|1+4U4O|1|4, 4U4Z|1|1+4U4Z|1|4, 4U53|1|1+4U53|1|4, 4V7R|1|B1+4V7R|1|B3, 5FCJ|1|5+5FCJ|1|8, 4U3U|1|1+4U3U|1|4, 4U4R|1|1+4U4R|1|4, 4U55|1|5+4U55|1|8, 4U4N|1|5+4U4N|1|8, 4U52|1|5+4U52|1|8, 5FCJ|1|1+5FCJ|1|4, 4U4Q|1|5+4U4Q|1|8, 5FCI|1|5+5FCI|1|8

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13JCT|1|1+3JCT|1|2Title: Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083058
24V88|1|A5+4V88|1|A8Title: The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
34U4U|1|5+4U4U|1|8Title: Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
44U4U|1|1+4U4U|1|4Title: Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
54V88|1|A1+4V88|1|A4Title: The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
65GAK|1|1+5GAK|1|4Title: Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.883165

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