Equivalence class NR_4.0_08761.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5EAO|1|B (rep) | RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3') | synthetic construct | Synthetic | Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+ | X-ray diffraction | 2.99 | 2016-02-24 | ||
| 2 | 5EAQ|1|B | RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3') | synthetic construct | Synthetic | Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+ | X-ray diffraction | 3.2 | 2016-02-24 | ||
| 3 | 5DH7|1|B | 5'-R(*GP*GP*GP*CP*GP*UP*DC*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3' | synthetic construct | Synthetic | Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+ | X-ray diffraction | 3.06 | 2015-10-07 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_08761.1 | NR_4.0_08761.2 | 6.0 | (2) 5EAQ|1|B, 5EAO|1|B | (1) 5DH7|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5EAQ|1|B | Title: Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+ | X-RAY DIFFRACTION | 3.2 | 19 | ||
| 2 | 5EAO|1|B | Title: Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+ | X-RAY DIFFRACTION | 2.99 | 19 | ||
| 3 | 5DH7|1|B | Title: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+ | X-RAY DIFFRACTION | 3.06 | 19 |
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