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Equivalence class NR_4.0_07451.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12P7D|1|D+ 2P7D|1|C+ 2P7D|1|P (rep)Ribozyme strand II, Ribozyme strand III, 3' substrate strand, octameric fragmentA Minimal, 'Hinged' Hairpin Ribozyme Construct Solved with Mimics of the Product Strands at 2.25 Angstroms ResolutionX-ray diffraction2.252007-05-22
22D2K|1|D+ 2D2K|1|C+ 2D2K|1|A+ 2D2K|1|B5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3', 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*UP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'Crystal Structure of a minimal, native (U39) all-RNA hairpin ribozymeX-ray diffraction2.652005-11-01
33I2U|1|C5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'Crystal structure of the haiprin ribozyme with a 2',5'-linked substrate and N1-deazaadenosine at position A10X-ray diffraction2.82009-11-03
43CQS|1|C19-mer ribozyme strandA 3'-OH, 2',5'-phosphodiester substitution in the hairpin ribozyme active site reveals similarities with protein ribonucleasesX-ray diffraction2.82008-05-20

Release history

Release6.0
Date2017-04-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_07451.1NR_4.0_20022.16.0(4) 2P7D|1|D+2P7D|1|C+2P7D|1|P, 3CQS|1|C, 3I2U|1|C, 2D2K|1|D+2D2K|1|C+2D2K|1|A+2D2K|1|B(0) (21) 1ZFV|1|D+1ZFV|1|C+1ZFV|1|A+1ZFV|1|B, 3CR1|1|C, 4G6R|1|D+4G6R|1|C+4G6R|1|A+4G6R|1|B, 3I2S|1|C, 2NPY|1|D+2NPY|1|C+2NPY|1|A+2NPY|1|B, 3GS1|1|D+3GS1|1|C+3GS1|1|A+3GS1|1|B, 1ZFX|1|D+1ZFX|1|C+1ZFX|1|A+1ZFX|1|B, 2NPZ|1|D+2NPZ|1|C+2NPZ|1|A+2NPZ|1|B, 2BCY|1|D+2BCY|1|C+2BCY|1|A+2BCY|1|B, 1X9C|1|D+1X9C|1|C+1X9C|1|A+1X9C|1|B, 3GS8|1|D+3GS8|1|C+3GS8|1|A+3GS8|1|B, 2OUE|1|D+2OUE|1|C+2OUE|1|A+2OUE|1|B, 3I2Q|1|C, 2BCZ|1|D+2BCZ|1|C+2BCZ|1|A+2BCZ|1|B, 2P7E|1|D+2P7E|1|C+2P7E|1|P, 1X9K|1|D+1X9K|1|C+1X9K|1|A+1X9K|1|B, 2D2L|1|D+2D2L|1|C+2D2L|1|A+2D2L|1|B, 1ZFT|1|D+1ZFT|1|C+1ZFT|1|A+1ZFT|1|B, 3I2R|1|C, 2P7F|1|D+2P7F|1|C+2P7F|1|A+2P7F|1|B, 2FGP|1|D+2FGP|1|C+2FGP|1|A+2FGP|1|B

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_07451.1NR_4.0_27812.17.0(4) 2D2K|1|D+2D2K|1|C+2D2K|1|A+2D2K|1|B, 2P7D|1|D+2P7D|1|C+2P7D|1|P, 3CQS|1|C, 3I2U|1|C(0) (21) 2P7F|1|D+2P7F|1|C+2P7F|1|A+2P7F|1|B, 2FGP|1|D+2FGP|1|C+2FGP|1|A+2FGP|1|B, 1ZFV|1|D+1ZFV|1|C+1ZFV|1|A+1ZFV|1|B, 3I2S|1|C, 3CR1|1|C, 2P7E|1|D+2P7E|1|C+2P7E|1|P, 2D2L|1|D+2D2L|1|C+2D2L|1|A+2D2L|1|B, 1ZFT|1|D+1ZFT|1|C+1ZFT|1|A+1ZFT|1|B, 3I2R|1|C, 2OUE|1|D+2OUE|1|C+2OUE|1|A+2OUE|1|B, 2BCZ|1|D+2BCZ|1|C+2BCZ|1|A+2BCZ|1|B, 1X9K|1|D+1X9K|1|C+1X9K|1|A+1X9K|1|B, 3I2Q|1|C, 2NPZ|1|D+2NPZ|1|C+2NPZ|1|A+2NPZ|1|B, 2BCY|1|D+2BCY|1|C+2BCY|1|A+2BCY|1|B, 1X9C|1|D+1X9C|1|C+1X9C|1|A+1X9C|1|B, 3GS8|1|D+3GS8|1|C+3GS8|1|A+3GS8|1|B, 2NPY|1|D+2NPY|1|C+2NPY|1|A+2NPY|1|B, 1ZFX|1|D+1ZFX|1|C+1ZFX|1|A+1ZFX|1|B, 4G6R|1|D+4G6R|1|C+4G6R|1|A+4G6R|1|B, 3GS1|1|D+3GS1|1|C+3GS1|1|A+3GS1|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13I2U|1|CTitle: Crystal structure of the haiprin ribozyme with a 2',5'-linked substrate and N1-deazaadenosine at position A10X-RAY DIFFRACTION2.819
22P7D|1|D+2P7D|1|C+2P7D|1|PTitle: A Minimal, 'Hinged' Hairpin Ribozyme Construct Solved with Mimics of the Product Strands at 2.25 Angstroms ResolutionX-RAY DIFFRACTION2.2519
33CQS|1|CTitle: A 3'-OH, 2',5'-phosphodiester substitution in the hairpin ribozyme active site reveals similarities with protein ribonucleasesX-RAY DIFFRACTION2.819
42D2K|1|D+2D2K|1|C+2D2K|1|A+2D2K|1|BTitle: Crystal Structure of a minimal, native (U39) all-RNA hairpin ribozymeX-RAY DIFFRACTION2.6522

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