NR_4.0_07428.3

Members (16)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5AXM\|1\|P (rep)	Transfer RNA	RNA (75-MER)	Saccharomyces cerevisiae	Eukarya	RF00005	Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)	X-ray diffraction	2.21	2016-08-03
2	5AXN\|1\|P	Transfer RNA	RNA (75-MER)	Saccharomyces cerevisiae	Eukarya	RF00005	Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP	X-ray diffraction	2.7	2016-08-03
3	1OB2\|1\|B	Transfer RNA	TRANSFER-RNA, PHE	Saccharomyces cerevisiae	Eukarya	RF00005	E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA	X-ray diffraction	3.35	2004-05-27
4	4TNA\|1\|A	Transfer RNA	TRNAPHE	Saccharomyces cerevisiae	Eukarya	RF00005	FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE	X-ray diffraction	2.5	1978-04-12
5	1EHZ\|1\|A	Transfer RNA	TRANSFER RNA (PHE)	Saccharomyces cerevisiae	Eukarya	RF00005	The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution	X-ray diffraction	1.93	2000-10-02
6	1I9V\|1\|A	Transfer RNA	PHENYLALANINE TRANSFER RNA	Saccharomyces cerevisiae	Eukarya	RF00005	CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX	X-ray diffraction	2.6	2001-06-04
7	6GZ5\|1\|Bw	Transfer RNA	E/E-site-tRNA, mRNA	Saccharomyces cerevisiae	Eukarya	RF00005	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	2018-12-05
8	6GZ3\|1\|Bw	Transfer RNA	pe/E-site-tRNA, mRNA	Saccharomyces cerevisiae	Eukarya	RF00005	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	2018-12-05
9	1TN1\|1\|A	Transfer RNA	TRNAPHE	Saccharomyces cerevisiae	Eukarya	RF00005	CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA	X-ray diffraction	3	1987-01-15
10	1TN2\|1\|A	Transfer RNA	TRNAPHE	Saccharomyces cerevisiae	Eukarya	RF00005	CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA	X-ray diffraction	3	1986-10-24
11	5M1J\|1\|A3	Transfer RNA	yeast Phe-tRNA-Phe, nonstop mRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
12	6GQV\|1\|AY	Transfer RNA	Transfer RNA - Phe, Messenger RNA	Saccharomyces cerevisiae	Eukarya	RF00005	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	Electron microscopy	4	2018-07-11
13	4TRA\|1\|A	Transfer RNA	TRNAPHE	Saccharomyces cerevisiae	Eukarya	RF00005	RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS	X-ray diffraction	3	1987-11-06
14	6TNA\|1\|A	Transfer RNA	TRNAPHE	Saccharomyces cerevisiae	Eukarya	RF00005	CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT	X-ray diffraction	2.7	1979-01-16
15	6GQB\|1\|AX	Transfer RNA	Transfer RNA - Phe, Messenger RNA	Saccharomyces cerevisiae	Eukarya	RF00005	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	Electron microscopy	3.9	2018-07-11
16	1TRA\|1\|A	Transfer RNA	TRNAPHE	Saccharomyces cerevisiae	Eukarya	RF00005	RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES	X-ray diffraction	3	1986-07-14

Release history

Release	9.19	9.20	9.21	9.22	9.23	9.24
Date	2018-12-05	2018-12-12	2018-12-19	2018-12-26	2019-01-02	2019-01-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5M1J\|1\|A3	Title: Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	62
2	5AXN\|1\|P	Title: Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP	X-RAY DIFFRACTION	2.7	65
3	5AXM\|1\|P	Title: Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)	X-RAY DIFFRACTION	2.21	72
4	1TN2\|1\|A	Title: CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA	X-RAY DIFFRACTION	3	62
5	1TN1\|1\|A	Title: CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA	X-RAY DIFFRACTION	3	62
6	4TNA\|1\|A	Title: FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE	X-RAY DIFFRACTION	2.5	62
7	1TRA\|1\|A	Title: RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES	X-RAY DIFFRACTION	3	62
8	1EHZ\|1\|A	Title: The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution	X-RAY DIFFRACTION	1.93	62
9	6TNA\|1\|A	Title: CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT	X-RAY DIFFRACTION	2.7	62
10	4TRA\|1\|A	Title: RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS	X-RAY DIFFRACTION	3	62
11	1I9V\|1\|A	Title: CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX	X-RAY DIFFRACTION	2.6	74
12	1OB2\|1\|B	Title: E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA	X-RAY DIFFRACTION	3.35	63
13	6GZ5\|1\|Bw	Title: tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	76
14	6GZ3\|1\|Bw	Title: tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	76
15	6GQB\|1\|AX	Title: Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	ELECTRON MICROSCOPY	3.9	76
16	6GQV\|1\|AY	Title: Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	ELECTRON MICROSCOPY	4	76

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_07428.3 Current

Release history

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