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Equivalence class NR_4.0_06911.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15UED|1|A+ 5UED|1|B (rep)RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-ray diffraction1.52017-07-05
26C8J|1|A+ 6C8J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-activated 2-AIpG monomer complex, 15 min soakingX-ray diffraction1.52018-05-30
36C8D|1|A+ 6C8D|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-dGMP complex with Mg ionX-ray diffraction1.922018-05-30
46C8I|1|A+ 6C8I|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-activated 2-AIpG monomer complex, 5 min soakingX-ray diffraction1.772018-05-30
55UEE|1|A+ 5UEE|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.92017-07-05
66C8L|1|A+ 6C8L|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-activated 2-AIpG monomer complex, 1h soakingX-ray diffraction2.252018-05-30
76C8E|1|A+ 6C8E|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-imidazolium-bridged intermediate complex, 4h soakingX-ray diffraction1.82018-05-30
85UEF|1|A+ 5UEF|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-ray diffraction2.12017-07-05
96C8K|1|A+ 6C8K|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-activated 2-AIpG monomer complex, 30 min soakingX-ray diffraction2.262018-05-30
106CAB|1|A+ 6CAB|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA-dGMP complex with Sr ionX-ray diffraction2.52018-05-30
115UEG|1|A+ 5UEG|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-ray diffraction2.62017-07-05
125UEG|1|C+ 5UEG|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructSyntheticRNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-ray diffraction2.62017-07-05

Release history

Release9.159.169.179.189.199.209.219.229.239.24
Date2018-11-092018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_06911.1NR_4.0_60941.19.15(5) 5UEF|1|A+5UEF|1|B, 5UEE|1|A+5UEE|1|B, 5UED|1|A+5UED|1|B, 5UEG|1|C+5UEG|1|D, 5UEG|1|A+5UEG|1|B(7) 6CAB|1|A+6CAB|1|B, 6C8L|1|A+6C8L|1|B, 6C8K|1|A+6C8K|1|B, 6C8J|1|A+6C8J|1|B, 6C8I|1|A+6C8I|1|B, 6C8E|1|A+6C8E|1|B, 6C8D|1|A+6C8D|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
16CAB|1|A+6CAB|1|BTitle: RNA-dGMP complex with Sr ionX-RAY DIFFRACTION2.512
26C8L|1|A+6C8L|1|BTitle: RNA-activated 2-AIpG monomer complex, 1h soakingX-RAY DIFFRACTION2.2510
36C8K|1|A+6C8K|1|BTitle: RNA-activated 2-AIpG monomer complex, 30 min soakingX-RAY DIFFRACTION2.2610
45UEE|1|A+5UEE|1|BTitle: RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.911
56C8E|1|A+6C8E|1|BTitle: RNA-imidazolium-bridged intermediate complex, 4h soakingX-RAY DIFFRACTION1.810
66C8J|1|A+6C8J|1|BTitle: RNA-activated 2-AIpG monomer complex, 15 min soakingX-RAY DIFFRACTION1.510
76C8D|1|A+6C8D|1|BTitle: RNA-dGMP complex with Mg ionX-RAY DIFFRACTION1.9210
85UEG|1|C+5UEG|1|DTitle: RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-RAY DIFFRACTION2.611
95UEG|1|A+5UEG|1|BTitle: RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligandX-RAY DIFFRACTION2.611
105UEF|1|A+5UEF|1|BTitle: RNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.111
115UED|1|A+5UED|1|BTitle: RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-RAY DIFFRACTION1.511
126C8I|1|A+6C8I|1|BTitle: RNA-activated 2-AIpG monomer complex, 5 min soakingX-RAY DIFFRACTION1.7710

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