Equivalence class NR_4.0_05112.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4PEI|1|Z (rep) | RNA (5'-R(*UP*AP*AP*CP*A)-3') | synthetic construct | Synthetic | Dbr1 in complex with synthetic branched RNA analog | X-ray diffraction | 1.95 | 2014-08-27 | ||
| 2 | 4PEI|1|Y | RNA (5'-R(*UP*AP*AP*CP*A)-3') | synthetic construct | Synthetic | Dbr1 in complex with synthetic branched RNA analog | X-ray diffraction | 1.95 | 2014-08-27 | ||
| 3 | 4PEI|1|X | RNA (5'-R(*UP*AP*AP*CP*A)-3') | synthetic construct | Synthetic | Dbr1 in complex with synthetic branched RNA analog | X-ray diffraction | 1.95 | 2014-08-27 | ||
| 4 | 4PEI|1|W | RNA (5'-R(*UP*AP*AP*CP*A)-3') | synthetic construct | Synthetic | Dbr1 in complex with synthetic branched RNA analog | X-ray diffraction | 1.95 | 2014-08-27 | ||
| 5 | 4PEI|1|V | RNA (5'-R(*UP*AP*AP*CP*A)-3') | synthetic construct | Synthetic | Dbr1 in complex with synthetic branched RNA analog | X-ray diffraction | 1.95 | 2014-08-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_05112.1 | NR_all_13739.1 | 3.0 | (1) 4PEI|1|W | (4) 4PEI|1|Z, 4PEI|1|Y, 4PEI|1|X, 4PEI|1|V | (0) |
| NR_4.0_05112.1 | NR_all_42424.1 | 3.0 | (2) 4PEI|1|X, 4PEI|1|Z | (3) 4PEI|1|Y, 4PEI|1|W, 4PEI|1|V | (0) |
| NR_4.0_05112.1 | NR_all_67465.1 | 3.0 | (1) 4PEI|1|Y | (4) 4PEI|1|Z, 4PEI|1|X, 4PEI|1|W, 4PEI|1|V | (0) |
| NR_4.0_05112.1 | NR_all_94048.1 | 3.0 | (1) 4PEI|1|V | (4) 4PEI|1|Z, 4PEI|1|Y, 4PEI|1|X, 4PEI|1|W | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4PEI|1|X | Title: Dbr1 in complex with synthetic branched RNA analog | X-RAY DIFFRACTION | 1.95 | 3 | ||
| 2 | 4PEI|1|W | Title: Dbr1 in complex with synthetic branched RNA analog | X-RAY DIFFRACTION | 1.95 | 3 | ||
| 3 | 4PEI|1|Z | Title: Dbr1 in complex with synthetic branched RNA analog | X-RAY DIFFRACTION | 1.95 | 3 | ||
| 4 | 4PEI|1|V | Title: Dbr1 in complex with synthetic branched RNA analog | X-RAY DIFFRACTION | 1.95 | 3 | ||
| 5 | 4PEI|1|Y | Title: Dbr1 in complex with synthetic branched RNA analog | X-RAY DIFFRACTION | 1.95 | 2 |
Coloring options: