Equivalence class NR_4.0_05044.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5DDP|1|B (rep) | Glutamine riboswitch | RNA (61-MER) | Synechococcus elongatus | Bacteria | RF01739 | L-glutamine riboswitch bound with L-glutamine | X-ray diffraction | 2.3 | 2015-12-23 |
| 2 | 5DDO|1|A | L-glutamine riboswitch (58-MER) | Synechococcus elongatus | Bacteria | Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch | X-ray diffraction | 3.1 | 2015-12-23 | ||
| 3 | 5DDQ|1|B | Glutamine riboswitch | L-glutamine riboswitch RNA (61-MER) | Synechococcus elongatus | Bacteria | RF01739 | L-glutamine riboswitch bound with L-glutamine soaked with Mn2+ | X-ray diffraction | 2.4 | 2015-12-23 |
| 4 | 5DDQ|1|A | Glutamine riboswitch | L-glutamine riboswitch RNA (61-MER) | Synechococcus elongatus | Bacteria | RF01739 | L-glutamine riboswitch bound with L-glutamine soaked with Mn2+ | X-ray diffraction | 2.4 | 2015-12-23 |
| 5 | 5DDP|1|A | Glutamine riboswitch | RNA (61-MER) | Synechococcus elongatus | Bacteria | RF01739 | L-glutamine riboswitch bound with L-glutamine | X-ray diffraction | 2.3 | 2015-12-23 |
| 6 | 5DDR|1|B | Glutamine riboswitch | L-glutamine riboswitch RNA (61-MER) | Synechococcus elongatus | Bacteria | RF01739 | L-glutamine riboswitch bound with L-glutamine soaked with Cs+ | X-ray diffraction | 2.61 | 2015-12-23 |
| 7 | 5DDR|1|A | Glutamine riboswitch | L-glutamine riboswitch RNA (61-MER) | Synechococcus elongatus | Bacteria | RF01739 | L-glutamine riboswitch bound with L-glutamine soaked with Cs+ | X-ray diffraction | 2.61 | 2015-12-23 |
| 8 | 5DDO|1|B | L-glutamine riboswitch (58-MER) | Synechococcus elongatus | Bacteria | Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch | X-ray diffraction | 3.1 | 2015-12-23 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_05044.1 | NR_all_10772.1 | 4.0 | (6) 5DDR|1|B, 5DDR|1|A, 5DDQ|1|B, 5DDQ|1|A, 5DDP|1|B, 5DDP|1|A | (2) 5DDO|1|B, 5DDO|1|A | (0) |
| NR_4.0_05044.1 | NR_all_20635.1 | 4.0 | (1) 5DDO|1|B | (7) 5DDR|1|B, 5DDR|1|A, 5DDQ|1|B, 5DDQ|1|A, 5DDP|1|B, 5DDP|1|A, 5DDO|1|A | (0) |
| NR_4.0_05044.1 | NR_all_35456.1 | 4.0 | (1) 5DDO|1|A | (7) 5DDQ|1|A, 5DDP|1|B, 5DDP|1|A, 5DDO|1|B, 5DDR|1|B, 5DDR|1|A, 5DDQ|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5DDP|1|B | Title: L-glutamine riboswitch bound with L-glutamine | X-RAY DIFFRACTION | 2.3 | 61 | ||
| 2 | 5DDQ|1|B | Title: L-glutamine riboswitch bound with L-glutamine soaked with Mn2+ | X-RAY DIFFRACTION | 2.4 | 61 | ||
| 3 | 5DDQ|1|A | Title: L-glutamine riboswitch bound with L-glutamine soaked with Mn2+ | X-RAY DIFFRACTION | 2.4 | 61 | ||
| 4 | 5DDP|1|A | Title: L-glutamine riboswitch bound with L-glutamine | X-RAY DIFFRACTION | 2.3 | 61 | ||
| 5 | 5DDR|1|B | Title: L-glutamine riboswitch bound with L-glutamine soaked with Cs+ | X-RAY DIFFRACTION | 2.61 | 61 | ||
| 6 | 5DDR|1|A | Title: L-glutamine riboswitch bound with L-glutamine soaked with Cs+ | X-RAY DIFFRACTION | 2.61 | 61 | ||
| 7 | 5DDO|1|A | Title: Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch | X-RAY DIFFRACTION | 3.1 | 58 | ||
| 8 | 5DDO|1|B | Title: Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch | X-RAY DIFFRACTION | 3.1 | 58 |
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