Equivalence class NR_4.0_03927.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2NR0|1|E (rep) | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 2 | 2NR0|1|G | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 3 | 2NR0|1|H | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 4 | 2NRE|1|F | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 4 | 2007-05-15 | ||
| 5 | 4V8C|1|CB | Transfer RNA | TRNA-LEU, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 6 | 4V8B|1|AB | Transfer RNA | TRNA-LEU, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 7 | 2NR0|1|F | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 8 | 4V8C|1|DB | Transfer RNA | TRNA-LEU, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 9 | 4WSM|1|2K | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 10 | 4WSM|1|2L | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 11 | 4V8B|1|CB | Transfer RNA | TRNA-LEU, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 12 | 4V87|1|BB | Transfer RNA | TRNA-LEU, MRNA | synthetic construct | Synthetic | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 13 | 4WSM|1|3L | Transfer RNA | tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 14 | 4WSM|1|1L | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 15 | 4WSM|1|1K | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 16 | 4V87|1|CB | Transfer RNA | TRNA-LEU, MRNA | synthetic construct | Synthetic | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 17 | 4WSM|1|3K | Transfer RNA | tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_03927.1 | NR_all_00947.1 | 4.0 | (5) 2NR0|1|G, 2NRE|1|F, 2NR0|1|F, 2NR0|1|H, 2NR0|1|E | (12) 4V8B|1|AB, 4WSM|1|3K, 4V87|1|CB, 4WSM|1|2L, 4V87|1|BB, 4WSM|1|2K, 4WSM|1|3L, 4WSM|1|1L, 4WSM|1|1K, 4V8C|1|DB, 4V8C|1|CB, 4V8B|1|CB | (0) |
| NR_4.0_03927.1 | NR_all_54384.1 | 4.0 | (2) 4WSM|1|3L, 4WSM|1|3K | (15) 4WSM|1|2L, 4WSM|1|2K, 4WSM|1|1L, 4WSM|1|1K, 4V8C|1|DB, 4V8C|1|CB, 4V8B|1|CB, 4V8B|1|AB, 4V87|1|CB, 4V87|1|BB, 2NRE|1|F, 2NR0|1|H, 2NR0|1|G, 2NR0|1|F, 2NR0|1|E | (0) |
| NR_4.0_03927.1 | NR_all_65435.1 | 4.0 | (10) 4V87|1|BB, 4V8C|1|CB, 4WSM|1|2L, 4WSM|1|2K, 4V8B|1|CB, 4WSM|1|1L, 4V8B|1|AB, 4WSM|1|1K, 4V87|1|CB, 4V8C|1|DB | (7) 2NR0|1|E, 2NRE|1|F, 2NR0|1|F, 2NR0|1|H, 2NR0|1|G, 4WSM|1|3L, 4WSM|1|3K | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2NRE|1|F | Title: Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 4 | 56 | ||
| 2 | 2NR0|1|E | Title: Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 81 | ||
| 3 | 2NR0|1|H | Title: Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 65 | ||
| 4 | 2NR0|1|F | Title: Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 74 | ||
| 5 | 2NR0|1|G | Title: Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 67 | ||
| 6 | 4WSM|1|1K | Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 | ||
| 7 | 4V8C|1|CB | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 | ||
| 8 | 4V87|1|BB | Title: Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 | ||
| 9 | 4V8B|1|AB | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 | ||
| 10 | 4V8C|1|DB | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 | ||
| 11 | 4V8B|1|CB | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 | ||
| 12 | 4V87|1|CB | Title: Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 | ||
| 13 | 4WSM|1|1L | Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 | ||
| 14 | 4WSM|1|2L | Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 74 | ||
| 15 | 4WSM|1|2K | Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 73 | ||
| 16 | 4WSM|1|3L | Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 75 | ||
| 17 | 4WSM|1|3K | Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 77 |
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