Equivalence class NR_4.0_02239.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V8E|1|BB (rep) | Transfer RNA | TRNA-TYR, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 2 | 4V8E|1|DD | Transfer RNA | TRNA-TYR | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 3 | 4V8E|1|BD | Transfer RNA | TRNA-TYR | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 4 | 4V8E|1|DB | Transfer RNA | TRNA-TYR, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 5 | 4WR6|1|3K | Transfer RNA | tRNA-Tyr | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
| 6 | 4WZD|1|3L | Transfer RNA | tRNA-Tyr | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-ray diffraction | 3.1 | 2015-06-10 |
| 7 | 4WZD|1|3K | Transfer RNA | tRNA-Tyr | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-ray diffraction | 3.1 | 2015-06-10 |
| 8 | 4WZD|1|2K | Transfer RNA | tRNA-Tyr, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-ray diffraction | 3.1 | 2015-06-10 |
| 9 | 4WZD|1|2L | Transfer RNA | tRNA-Tyr, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-ray diffraction | 3.1 | 2015-06-10 |
| 10 | 4WR6|1|1K | Transfer RNA | tRNA-Tyr, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
| 11 | 4WR6|1|1L | Transfer RNA | tRNA-Tyr, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
| 12 | 4WR6|1|3L | Transfer RNA | tRNA-Tyr | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_02239.1 | NR_4.0_24167.1 | 6.0 | (12) 4WZD|1|2L, 4WR6|1|1L, 4V8E|1|BD, 4WZD|1|3L, 4WR6|1|3L, 4V8E|1|DB, 4WR6|1|1K, 4V8E|1|BB, 4WZD|1|3K, 4WZD|1|2K, 4V8E|1|DD, 4WR6|1|3K | (0) | (20) 4WRA|1|1K, 4WU1|1|3K, 4V8D|1|CB, 4V8F|1|BB, 4WQ1|1|3K, 4WRA|1|3K, 4V8F|1|CB, 4WRA|1|1L, 4WU1|1|2L, 4WU1|1|3L, 4V8F|1|BD, 4WQ1|1|1L, 4V8D|1|AD, 4WQ1|1|1K, 4V8D|1|AB, 4WU1|1|2K, 4V8D|1|CD, 4V8F|1|CD, 4WRA|1|3L, 4WQ1|1|3L |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_02239.1 | NR_4.0_16115.1 | 7.0 | (12) 4V8E|1|BD, 4WZD|1|2L, 4WR6|1|1L, 4WZD|1|3K, 4WR6|1|3K, 4V8E|1|DB, 4WZD|1|3L, 4WR6|1|3L, 4V8E|1|DD, 4WZD|1|2K, 4WR6|1|1K, 4V8E|1|BB | (0) | (20) 4V8D|1|CB, 4WU1|1|3L, 4WU1|1|3K, 4WRA|1|3L, 4WRA|1|3K, 4WQ1|1|3L, 4WQ1|1|3K, 4V8F|1|CB, 4V8D|1|CD, 4V8D|1|AD, 4WU1|1|2L, 4WRA|1|1L, 4WQ1|1|1L, 4V8F|1|BD, 4V8D|1|AB, 4WU1|1|2K, 4WRA|1|1K, 4WQ1|1|1K, 4V8F|1|BB, 4V8F|1|CD |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4WR6|1|3L | Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 85 | ||
| 2 | 4WZD|1|3L | Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-RAY DIFFRACTION | 3.1 | 78 | ||
| 3 | 4WR6|1|3K | Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 78 | ||
| 4 | 4WZD|1|3K | Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-RAY DIFFRACTION | 3.1 | 78 | ||
| 5 | 4V8E|1|BD | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 84 | ||
| 6 | 4V8E|1|DD | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 84 | ||
| 7 | 4WR6|1|1L | Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 85 | ||
| 8 | 4V8E|1|DB | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 84 | ||
| 9 | 4V8E|1|BB | Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 84 | ||
| 10 | 4WR6|1|1K | Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 78 | ||
| 11 | 4WZD|1|2L | Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-RAY DIFFRACTION | 3.1 | 71 | ||
| 12 | 4WZD|1|2K | Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-site | X-RAY DIFFRACTION | 3.1 | 75 |
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