Equivalence class NR_4.0_01624.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4A3G|1|P (rep) | TRANSCRIPT RNA 5'-R(*CP*AP)-3' | Saccharomyces cerevisiae | Eukarya | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid | X-ray diffraction | 3.5 | 2012-02-08 | ||
| 2 | 4A3J|1|P | 5'-R(*CP*AP)-3' | synthetic construct | Synthetic | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP | X-ray diffraction | 3.7 | 2011-12-07 | ||
| 3 | 5MMI|1|z | E-site tRNA | Spinacia oleracea | Chloroplast | Structure of the large subunit of the chloroplast ribosome | Electron microscopy | 3.2 | 2017-01-11 | ||
| 4 | 3J9M|1|u | E-site tRNA | Homo sapiens | Mitochondria | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
Release history
| Release | 8.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4A3J|1|P | Title: RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP | X-RAY DIFFRACTION | 3.7 | 2 | ||
| 2 | 3J9M|1|u | Title: Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 2 | ||
| 3 | 4A3G|1|P | Title: RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid | X-RAY DIFFRACTION | 3.5 | 2 | ||
| 4 | 5MMI|1|z | Title: Structure of the large subunit of the chloroplast ribosome | ELECTRON MICROSCOPY | 3.2 | 2 |
Coloring options: