Equivalence class NR_3.5_97398.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V4Q|1|CA (rep) | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
| 2 | 4V4Q|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
| 3 | 5J91|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
| 4 | 5J91|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
| 5 | 5J88|1|AA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
| 6 | 5IQR|1|2 | Small subunit ribosomal RNA | SSU rRNA | Escherichia coli | Bacteria | RF00177 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
| 7 | 4V50|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
| 8 | 5J88|1|BA | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
| 9 | 5AFI|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 10 | 4V50|1|CA | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
| 11 | 4V85|1|AA | Small subunit ribosomal RNA | 16S rRNA | RF00177 | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-ray diffraction | 3.2 | 2014-07-09 | ||
| 12 | 3JCE|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Escherichia coli | Bacteria | RF00177 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 |
| 13 | 3JBV|1|A | Small subunit ribosomal RNA | RNA (1530-MER) | Escherichia coli | Bacteria | RF00177 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.32 | 2016-01-27 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_97398.1 | NR_3.5_59913.2 | 6.0 | (13) 3JCE|1|a, 4V85|1|AA, 4V50|1|AA, 5J88|1|AA, 5IQR|1|2, 5J91|1|AA, 5J88|1|BA, 3JBV|1|A, 4V50|1|CA, 4V4Q|1|CA, 5AFI|1|a, 5J91|1|BA, 4V4Q|1|AA | (0) | (58) 4V52|1|AA, 4V6C|1|AA, 4V9P|1|FA, 4YBB|1|AA, 4V4H|1|AA, 4V9P|1|BA, 4U20|1|AA, 4WOI|1|AA, 4U26|1|AA, 4V54|1|AA, 4V9O|1|BA, 4WF1|1|AA, 4U25|1|AA, 4V9D|1|AA, 4V64|1|AA, 4WWW|1|QA, 4U27|1|AA, 4V57|1|AA, 4V9O|1|FA, 5J8A|1|AA, 4V9O|1|DA, 4WF1|1|CA, 4U25|1|CA, 4V9D|1|BA, 5JC9|1|BA, 4V9P|1|DA, 4U20|1|CA, 4U27|1|CA, 4V7V|1|CA, 4V9O|1|HA, 4U1V|1|CA, 4U26|1|CA, 4V7U|1|CA, 4V52|1|CA, 4V9P|1|HA, 4U24|1|CA, 4V4H|1|CA, 4V9C|1|CA, 4WOI|1|DA, 4V54|1|CA, 4V7V|1|AA, 4U1U|1|AA, 4V7T|1|AA, 5JC9|1|AA, 4U24|1|AA, 4V7S|1|AA, 4U1V|1|AA, 4V7U|1|AA, 4V9C|1|AA, 4V7S|1|CA, 4V64|1|CA, 4WWW|1|XA, 4U1U|1|CA, 4V57|1|CA, 5J8A|1|BA, 4V6C|1|CA, 4YBB|1|BA, 4V7T|1|CA |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_97398.1 | NR_3.5_47864.1 | 7.0 | (13) 4V50|1|CA, 5IQR|1|2, 3JCE|1|a, 4V50|1|AA, 5J91|1|AA, 5AFI|1|a, 4V4Q|1|AA, 5J88|1|BA, 5J91|1|BA, 3JBV|1|A, 4V4Q|1|CA, 4V85|1|AA, 5J88|1|AA | (0) | (58) 4V9D|1|AA, 4V9O|1|DA, 4U26|1|CA, 4V4H|1|AA, 4V9P|1|DA, 4V52|1|CA, 4WOI|1|DA, 4V57|1|AA, 4YBB|1|BA, 4V7S|1|CA, 5JC9|1|AA, 4V7U|1|AA, 4U1U|1|CA, 4V7V|1|CA, 4U20|1|CA, 4U25|1|AA, 4WF1|1|AA, 4V57|1|CA, 4YBB|1|AA, 4V6C|1|AA, 4U20|1|AA, 4U24|1|CA, 4V9D|1|BA, 4U26|1|AA, 4V9O|1|FA, 4V64|1|CA, 4V7S|1|AA, 4V9C|1|CA, 4V9O|1|BA, 4U27|1|CA, 4V9P|1|BA, 4V52|1|AA, 4WOI|1|AA, 4V54|1|CA, 5J8A|1|BA, 4V7T|1|CA, 4U1U|1|AA, 4V7V|1|AA, 4V9P|1|HA, 4WWW|1|XA, 4U1V|1|CA, 4U24|1|AA, 4U25|1|CA, 4V64|1|AA, 4V6C|1|CA, 4U27|1|AA, 4V9O|1|HA, 4V4H|1|CA, 4WF1|1|CA, 4V54|1|AA, 5J8A|1|AA, 4V7T|1|AA, 5JC9|1|BA, 4V7U|1|CA, 4V9C|1|AA, 4V9P|1|FA, 4WWW|1|QA, 4U1V|1|AA |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5IQR|1|2 | Title: Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 1522 | ||
| 2 | 5AFI|1|a | Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 1528 | ||
| 3 | 3JCE|1|a | Title: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | ELECTRON MICROSCOPY | 3.2 | 1533 | ||
| 4 | 3JBV|1|A | Title: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | ELECTRON MICROSCOPY | 3.32 | 1530 | ||
| 5 | 4V50|1|CA | Title: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 1530 | ||
| 6 | 4V50|1|AA | Title: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 1530 | ||
| 7 | 4V4Q|1|AA | Title: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 1530 | ||
| 8 | 5J88|1|BA | Title: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 1522 | ||
| 9 | 5J91|1|BA | Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 1522 | ||
| 10 | 5J91|1|AA | Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 1523 | ||
| 11 | 5J88|1|AA | Title: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 1523 | ||
| 12 | 4V85|1|AA | Title: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-RAY DIFFRACTION | 3.2 | 1532 | ||
| 13 | 4V4Q|1|CA | Title: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 1530 |
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