RNA 3D Hub //

Equivalence class NR_3.5_41695.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15FDU|1|1A (rep)Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92016-01-27
25HD1|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
35F8K|1|1ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
45J4B|1|1ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
55DOY|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
65FDU|1|2ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92016-01-27
75F8K|1|2ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
84YZV|1|YALarge subunit ribosomal RNA23S rRNA, CC-puromycinThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-ray diffraction3.12015-10-21
94V83|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.52014-07-09
104V83|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.52014-07-09
115HD1|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
124W4G|1|YALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
134YZV|1|RALarge subunit ribosomal RNA23S rRNA, CC-puromycinThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-ray diffraction3.12015-10-21
145J4B|1|2ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
155DOY|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
164W4G|1|RALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
174V84|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.42014-07-09
184V84|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.42014-07-09
194YPB|1|RALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
204YPB|1|YALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
214V9I|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
224V9I|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
234V8C|1|AALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
244V9Q|1|AALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-ray diffraction3.42014-07-09
254TUE|1|YALarge subunit ribosomal RNA23S rRNA, CC-PuroThermus thermophilusBacteriaRF02541Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-ray diffraction3.52015-05-13
264V9Q|1|CALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-ray diffraction3.42014-07-09
274V8N|1|DALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-ray diffraction3.12014-07-09
284TUE|1|RALarge subunit ribosomal RNA23S rRNA, CC-PuroThermus thermophilusBacteriaRF02541Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-ray diffraction3.52015-05-13
294V8N|1|BALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-ray diffraction3.12014-07-09
305IBB|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
314WT8|1|D1Large subunit ribosomal RNA23S rRNA (2899-MER)Thermus thermophilusBacteriaRF02541Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-ray diffraction3.42015-01-21
324WT8|1|C1Large subunit ribosomal RNA23S rRNA (2899-MER)Thermus thermophilusBacteriaRF02541Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-ray diffraction3.42015-01-21
334V7M|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
345IBB|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
354V8E|1|AALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
364V9B|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of the 70S ribosome with tigecycline.X-ray diffraction3.12014-07-09
375E81|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-ray diffraction2.952016-01-27
384V5K|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09
394V8C|1|BALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
404V5K|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09
414WZD|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-ray diffraction3.12015-06-10
425IB8|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-ray diffraction3.132016-05-25
435E7K|1|1HLarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-ray diffraction3.22016-01-27
444V8E|1|CALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
454WRO|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
465EL6|1|1HLarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-ray diffraction3.12016-01-27
475E81|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-ray diffraction2.952016-01-27
484V7M|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
494WZD|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-ray diffraction3.12015-06-10
504WR6|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
515IB8|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-ray diffraction3.132016-05-25
525EL4|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-ray diffraction3.152016-01-27
534WSM|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10
544V9L|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF0254170S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
554V9B|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of the 70S ribosome with tigecycline.X-ray diffraction3.12014-07-09
564V9L|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF0254170S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
575EL4|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-ray diffraction3.152016-01-27
585EL6|1|14Large subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-ray diffraction3.12016-01-27
594WR6|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
604V8Q|1|AALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-ray diffraction3.12014-07-09
614WRO|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
625E7K|1|14Large subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-ray diffraction3.22016-01-27
634WSM|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10

Release history

Release6.0
Date2017-04-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_41695.1NR_3.5_51018.16.0(63) 4V8E|1|AA, 4WSM|1|1H, 5E7K|1|1H, 5HD1|1|2A, 4TUE|1|RA, 4W4G|1|YA, 4YPB|1|YA, 5EL6|1|1H, 4V9I|1|DA, 4V8N|1|BA, 4YPB|1|RA, 5IB8|1|1H, 4V5K|1|BA, 4V83|1|DA, 4V9I|1|BA, 5F8K|1|2A, 4V8E|1|CA, 4WT8|1|D1, 5E81|1|1H, 5IB8|1|14, 4TUE|1|YA, 4WR6|1|14, 4YZV|1|RA, 5F8K|1|1A, 4V9L|1|BA, 4WT8|1|C1, 4V5K|1|DA, 5E81|1|14, 4V8N|1|DA, 5IBB|1|14, 4V84|1|DA, 5FDU|1|1A, 5EL4|1|14, 4V84|1|BA, 4WRO|1|14, 5DOY|1|1A, 4V9Q|1|AA, 4V8Q|1|AA, 4WR6|1|1H, 4YZV|1|YA, 5J4B|1|1A, 4V8C|1|AA, 4V9L|1|DA, 5FDU|1|2A, 4V7M|1|BA, 5EL4|1|1H, 5IBB|1|1H, 4WRO|1|1H, 5DOY|1|2A, 4V9Q|1|CA, 4WZD|1|1H, 4V9B|1|DA, 5J4B|1|2A, 4V8C|1|BA, 4WZD|1|14, 4V7M|1|DA, 4V9B|1|BA, 5EL6|1|14, 5E7K|1|14, 5HD1|1|1A, 4W4G|1|RA, 4WSM|1|14, 4V83|1|BA(0) (157) 4V7J|1|BA, 5HAU|1|1A, 4WT1|1|14, 4W2F|1|BA, 4V8H|1|DA, 4WQF|1|AA, 4V9A|1|BA, 4V7Y|1|DA, 4V8F|1|DA, 4V6F|1|DA, 4V5C|1|BA, 4V5Q|1|DA, 4L47|1|RA, 5HAU|1|2A, 4V8X|1|DA, 5J4D|1|GB, 4Z8C|1|2A, 4V67|1|DA, 4W2F|1|DA, 4V5L|1|BA, 1VY6|1|BA, 5EL7|1|1H, 4WT1|1|1H, 4V7Z|1|BA, 5IB7|1|1H, 4Y4P|1|2A, 4WPO|1|CA, 4WRA|1|1H, 4V9S|1|BA, 4V8D|1|BA, 4V90|1|BA, 4V7X|1|BA, 4V5P|1|BA, 4WZO|1|1H, 4V6A|1|BA, 4V51|1|DA, 4V9N|1|BA, 1VY6|1|DA, 5FDV|1|1A, 4V7L|1|BA, 4V5E|1|DA, 4WQ1|1|14, 4V63|1|BA, 4LSK|1|YA, 5HCR|1|1A, 1VY4|1|DA, 5EL5|1|14, 4WQY|1|AA, 4Y4O|1|1A, 4W2I|1|BA, 4V8I|1|DA, 4L47|1|YA, 4V9N|1|DA, 4V8A|1|BA, 4V63|1|DA, 4ZER|1|1A, 4V7L|1|DA, 4V5J|1|BA, 4W2G|1|BA, 4V8G|1|DA, 5HCR|1|2A, 4V9H|1|BA, 4V7Z|1|DA, 4V5R|1|DA, 4WQY|1|CA, 4V6G|1|DA, 4V5D|1|BA, 1VVJ|1|RA, 4LNT|1|RA, 5HCP|1|2A, 4WU1|1|1H, 4V7X|1|DA, 4ZER|1|2A, 4WQR|1|1H, 4V9K|1|BA, 4V5A|1|BA, 4W2G|1|DA, 4V8H|1|BA, 5FDV|1|2A, 4WSD|1|1H, 4V5S|1|BA, 4WQ1|1|1H, 4V95|1|DA, 1VVJ|1|YA, 4W2E|1|A, 4V8F|1|AA, 4V6F|1|AA, 4V7Y|1|BA, 4V5Q|1|BA, 1VY7|1|DA, 4V5A|1|DA, 5J4D|1|B, 4Z8C|1|1A, 4V8

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_41695.1NR_3.5_80669.17.0(63) 4V84|1|BA, 4V9B|1|DA, 4V8E|1|AA, 4V9L|1|DA, 4WT8|1|C1, 4V8Q|1|AA, 4WR6|1|14, 4YPB|1|RA, 4V9L|1|BA, 4WSM|1|14, 5DOY|1|2A, 4W4G|1|RA, 4WZD|1|1H, 5E81|1|1H, 5IB8|1|14, 4V5K|1|BA, 4YZV|1|YA, 5F8K|1|1A, 5J4B|1|1A, 5E81|1|14, 5HD1|1|1A, 5EL6|1|14, 5IBB|1|14, 4V83|1|BA, 4V8C|1|AA, 4V7M|1|BA, 4V8N|1|DA, 4V84|1|DA, 4V9I|1|BA, 4WRO|1|1H, 4V5K|1|DA, 4V8E|1|CA, 4V9Q|1|CA, 4WT8|1|D1, 4TUE|1|RA, 4WR6|1|1H, 4YPB|1|YA, 4WSM|1|1H, 5E7K|1|14, 5FDU|1|1A, 4W4G|1|YA, 5EL4|1|14, 5IB8|1|1H, 5DOY|1|1A, 5F8K|1|2A, 5J4B|1|2A, 5HD1|1|2A, 5EL6|1|1H, 4V83|1|DA, 4V7M|1|DA, 4V9I|1|DA, 4V8N|1|BA, 4WZD|1|14, 4TUE|1|YA, 4WRO|1|14, 4V9Q|1|AA, 5E7K|1|1H, 5FDU|1|2A, 5EL4|1|1H, 4V9B|1|BA, 4V8C|1|BA, 4YZV|1|RA, 5IBB|1|1H(0) (157) 4V5A|1|BA, 4V9S|1|DA, 4V9H|1|BA, 5J8B|1|A, 4V8G|1|BA, 5HCR|1|1A, 4V8A|1|AA, 5DOX|1|2A, 4V7X|1|BA, 4Y4P|1|2A, 4V67|1|DA, 4WT1|1|1H, 4V5Q|1|DA, 4WQF|1|AA, 4V5A|1|DA, 4LNT|1|RA, 4W2H|1|BA, 4LNT|1|YA, 4V9K|1|BA, 1VY5|1|DA, 4V8X|1|BA, 4V8F|1|AA, 5FDV|1|2A, 4ZER|1|2A, 4V6G|1|DA, 4V63|1|DA, 4WQY|1|AA, 4V5E|1|DA, 4V5P|1|DA, 4WQ1|1|14, 4V51|1|DA, 4V9S|1|BA, 4L47|1|YA, 4V9A|1|DA, 5J4D|1|GB, 4V8I|1|BA, 5HCQ|1|2A, 4V87|1|DA, 5DOX|1|1A, 5EL7|1|1H, 4V7W|1|DA, 4Y4P|1|1A, 4V67|1|BA, 4WT1|1|14, 4V5Q|1|BA, 4WQ1|1|1H, 4V5D|1|DA, 4W2G|1|DA, 4V9R|1|BA, 1VY5|1|BA, 5J4C|1|2A, 4V8D|1|DA, 4V7Z|1|DA, 4ZER|1|1A, 4V6G|1|BA, 4Y4O|1|1A, 4V63|1|BA, 4WQU|1|CA, 4V5P|1|BA, 4WPO|1|CA, 4V51|1|BA, 4W2F|1|DA, 4L47|1|RA, 4V9A|1|BA, 5J4D|1|B, 4V8H|1|DA, 5HCQ|1|1A, 4V87|1|AA, 5EL7|1|14, 4V7W|1|BA, 4V6F|1|AA, 4WSD|1|1H, 4V5D|1|BA, 4WQR|1|1H, 4LT8|1|RA, 4V9N|1|DA, 1VY4|1|DA, 4V95|1|BA, 5J4C|1|1A, 4V8D|1|BA, 5HCP|1|1A, 4V7Z|1|BA, 4Z8C|1|2A, 4V7L|1|BA, 4WZO|1|1H, 4V5S|1|DA, 4WQU|1|AA, 4WRA|1|1H, 4V5L|1|BA, 4WPO|1|AA, 4LT8|1|YA, 1VY7|1|BA, 4W2F|1|BA, 1VY

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14YPB|1|RATitle: Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.42891
24YZV|1|RATitle: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-RAY DIFFRACTION3.12891
34W4G|1|RATitle: Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.32891
44YPB|1|YATitle: Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.42875
54YZV|1|YATitle: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-RAY DIFFRACTION3.12875
64W4G|1|YATitle: Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.32875
75J4B|1|2ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62789
85J4B|1|1ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62861
95DOY|1|1ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.62860
105DOY|1|2ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.62789
114TUE|1|RATitle: Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-RAY DIFFRACTION3.52882
124WSM|1|1HTitle: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.32912
134WR6|1|1HTitle: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.052912
144WRO|1|1HTitle: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.052912
154V8E|1|AATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32912
164TUE|1|YATitle: Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-RAY DIFFRACTION3.52882
174V8C|1|AATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32912
184V9B|1|BATitle: Crystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12912
194WZD|1|1HTitle: Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-RAY DIFFRACTION3.12912
205IB8|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-RAY DIFFRACTION3.132831
215IBB|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.962841
225E81|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952888
235E7K|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-RAY DIFFRACTION3.22833
245EL6|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-RAY DIFFRACTION3.12833
255EL4|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-RAY DIFFRACTION3.152833
264WZD|1|14Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-RAY DIFFRACTION3.12909
274V9B|1|DATitle: Crystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12906
284V8C|1|BATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32909
294V8E|1|CATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32907
304WR6|1|14Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.052907
314WRO|1|14Title: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.052909
324WSM|1|14Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.32909
335EL4|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-RAY DIFFRACTION3.152861
345EL6|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-RAY DIFFRACTION3.12861
355E7K|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-RAY DIFFRACTION3.22861
365E81|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952855
375IBB|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.962810
385IB8|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-RAY DIFFRACTION3.132825
395HD1|1|1ATitle: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.72746
405FDU|1|2ATitle: Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92857
415F8K|1|2ATitle: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.82856
425F8K|1|1ATitle: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.82861
435FDU|1|1ATitle: Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92861
445HD1|1|2ATitle: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.72790
454V9L|1|BATitle: 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
464V9L|1|DATitle: 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
474V8Q|1|AATitle: Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.12901
484V84|1|BATitle: Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42760
494V84|1|DATitle: Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42760
504V83|1|DATitle: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52760
514V83|1|BATitle: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52760
524V9Q|1|CATitle: Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42832
534V9Q|1|AATitle: Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42832
544V7M|1|DATitle: The structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452775
554V7M|1|BATitle: The structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452789
564V8N|1|BATitle: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12848
574V8N|1|DATitle: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12848
584V5K|1|BATitle: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22807
594V5K|1|DATitle: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22807
604V9I|1|BATitle: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32807
614V9I|1|DATitle: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32807
624WT8|1|C1Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42807
634WT8|1|D1Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42807

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