Equivalence class NR_3.5_07547.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5IQR|1|3 (rep) | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
| 2 | 5U4I|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.5 | 2017-01-11 |
| 3 | 5LZE|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | Electron microscopy | 3.5 | 2016-11-23 |
| 4 | 3JCE|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 |
| 5 | 5LZD|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | Electron microscopy | 3.4 | 2016-11-23 |
| 6 | 5MDY|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.35 | 2016-12-21 |
| 7 | 5GAE|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | RNC in complex with a translocating SecYEG | Electron microscopy | 3.33 | 2016-01-27 |
| 8 | 3JBV|1|a | 5S ribosomal RNA | RNA (118-MER) | Escherichia coli | Bacteria | RF00001 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.32 | 2016-01-27 |
| 9 | 5U9G|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | Electron microscopy | 3.2 | 2017-03-22 |
| 10 | 5U9F|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | Electron microscopy | 3.2 | 2017-03-22 |
| 11 | 5MGP|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 2016-12-14 |
| 12 | 5MDW|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.06 | 2016-12-14 |
| 13 | 5MDZ|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S ribosome (empty A site) | Electron microscopy | 3.1 | 2016-12-14 |
| 14 | 5H5U|1|B | 5S ribosomal RNA | 5S Ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Mechanistic insights into the alternative translation termination by ArfA and RF2 | Electron microscopy | 3.01 | 2017-01-25 |
| 15 | 5MDV|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | Electron microscopy | 2.97 | 2016-12-14 |
| 16 | 5AFI|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 17 | 5J5B|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
| 18 | 4V4H|1|DA | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
| 19 | 4V4H|1|BA | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
| 20 | 5J5B|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
| 21 | 4V7U|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
| 22 | 4V7S|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
| 23 | 4V7V|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
| 24 | 4V6C|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
| 25 | 5J91|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
| 26 | 4WWW|1|YB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
| 27 | 4U24|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 28 | 5IT8|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
| 29 | 4U20|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 30 | 4V7T|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
| 31 | 4V9C|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
| 32 | 4U1U|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
| 33 | 4U26|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 34 | 4YBB|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
| 35 | 4V4Q|1|DA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
| 36 | 4V50|1|BA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
| 37 | 4U1V|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
| 38 | 4V4Q|1|BA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
| 39 | 4U25|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
| 40 | 5J88|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
| 41 | 4WF1|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
| 42 | 4U27|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 43 | 4V9O|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 44 | 4V54|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
| 45 | 4V54|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
| 46 | 4V57|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
| 47 | 4V64|1|BA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
| 48 | 4V64|1|DA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
| 49 | 4V57|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
| 50 | 4V85|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-ray diffraction | 3.2 | 2014-07-09 |
| 51 | 5JC9|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
| 52 | 4V50|1|DA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
| 53 | 4V9D|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 54 | 5J8A|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
| 55 | 4V7S|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
| 56 | 4V52|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
| 57 | 5J7L|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
| 58 | 4V52|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
| 59 | 4U1V|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
| 60 | 4V9C|1|DB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
| 61 | 4V7V|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
| 62 | 4U20|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 63 | 4V7U|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
| 64 | 4U1U|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
| 65 | 4V9P|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 66 | 4V9O|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 67 | 4U25|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
| 68 | 4V6C|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
| 69 | 4V9O|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 70 | 4V7T|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
| 71 | 4V9P|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 72 | 4U26|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 73 | 4WWW|1|RB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
| 74 | 4V9O|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 75 | 4U24|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 76 | 4V9P|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 77 | 4V9P|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 78 | 4V9D|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 79 | 4WOI|1|CB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
| 80 | 4WF1|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
| 81 | 5J88|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
| 82 | 4U27|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 83 | 5J91|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
| 84 | 5IT8|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
| 85 | 4WOI|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
| 86 | 4YBB|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
| 87 | 5J8A|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
| 88 | 5JC9|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
| 89 | 5J7L|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
Parents
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4V4H|1|DA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | ||
| 2 | 4V4Q|1|DA | Title: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | ||
| 3 | 4V4H|1|BA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | ||
| 4 | 4V4Q|1|BA | Title: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | ||
| 5 | 4V50|1|DA | Title: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 117 | ||
| 6 | 4V50|1|BA | Title: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 117 | ||
| 7 | 4V54|1|BA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 3.3 | 117 | ||
| 8 | 4V64|1|BA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-RAY DIFFRACTION | 3.5 | 117 | ||
| 9 | 4V52|1|BA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-RAY DIFFRACTION | 3.21 | 117 | ||
| 10 | 4V57|1|BA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-RAY DIFFRACTION | 3.5 | 117 | ||
| 11 | 4V57|1|DA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-RAY DIFFRACTION | 3.5 | 117 | ||
| 12 | 4V52|1|DA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-RAY DIFFRACTION | 3.21 | 117 | ||
| 13 | 4V64|1|DA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-RAY DIFFRACTION | 3.5 | 117 | ||
| 14 | 4V54|1|DA | Title: Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 3.3 | 117 | ||
| 15 | 3JBV|1|a | Title: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | ELECTRON MICROSCOPY | 3.32 | 117 | ||
| 16 | 5GAE|1|B | Title: RNC in complex with a translocating SecYEG | ELECTRON MICROSCOPY | 3.33 | 120 | ||
| 17 | 5LZD|1|B | Title: Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | ELECTRON MICROSCOPY | 3.4 | 120 | ||
| 18 | 5H5U|1|B | Title: Mechanistic insights into the alternative translation termination by ArfA and RF2 | ELECTRON MICROSCOPY | 3.01 | 120 | ||
| 19 | 3JCE|1|B | Title: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | ELECTRON MICROSCOPY | 3.2 | 118 | ||
| 20 | 5U9G|1|02 | Title: 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | ELECTRON MICROSCOPY | 3.2 | 119 | ||
| 21 | 5U9F|1|02 | Title: 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | ELECTRON MICROSCOPY | 3.2 | 119 | ||
| 22 | 5AFI|1|B | Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 120 | ||
| 23 | 5MGP|1|B | Title: Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | ELECTRON MICROSCOPY | 3.1 | 120 | ||
| 24 | 5LZE|1|B | Title: Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | ELECTRON MICROSCOPY | 3.5 | 120 | ||
| 25 | 5IQR|1|3 | Title: Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 118 | ||
| 26 | 5MDV|1|3 | Title: Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 120 | ||
| 27 | 5MDZ|1|3 | Title: Structure of the 70S ribosome (empty A site) | ELECTRON MICROSCOPY | 3.1 | 120 | ||
| 28 | 5MDW|1|3 | Title: Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.06 | 120 | ||
| 29 | 5MDY|1|3 | Title: Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.35 | 120 | ||
| 30 | 5JC9|1|CB | Title: Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-RAY DIFFRACTION | 3.03 | 118 | ||
| 31 | 5J7L|1|CB | Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 118 | ||
| 32 | 5J8A|1|CB | Title: Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-RAY DIFFRACTION | 3.1 | 118 | ||
| 33 | 5J91|1|CB | Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 118 | ||
| 34 | 5J5B|1|CB | Title: Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 118 | ||
| 35 | 5IT8|1|CB | Title: High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 3.12 | 118 | ||
| 36 | 5J88|1|CB | Title: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 118 | ||
| 37 | 5J88|1|DB | Title: Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 120 | ||
| 38 | 5IT8|1|DB | Title: High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 3.12 | 120 | ||
| 39 | 5JC9|1|DB | Title: Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-RAY DIFFRACTION | 3.03 | 120 | ||
| 40 | 5J7L|1|DB | Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 120 | ||
| 41 | 5J8A|1|DB | Title: Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-RAY DIFFRACTION | 3.1 | 120 | ||
| 42 | 5J5B|1|DB | Title: Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 120 | ||
| 43 | 5J91|1|DB | Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 120 | ||
| 44 | 4YBB|1|DB | Title: High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 120 | ||
| 45 | 4WOI|1|BB | Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 119 | ||
| 46 | 4V9C|1|DB | Title: Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 119 | ||
| 47 | 4V9D|1|CB | Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 119 | ||
| 48 | 4U20|1|BB | Title: Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 119 | ||
| 49 | 4U1U|1|BB | Title: Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 119 | ||
| 50 | 4WF1|1|BB | Title: Crystal structure of the E. coli ribosome bound to negamycin. | X-RAY DIFFRACTION | 3.09 | 119 | ||
| 51 | 4U25|1|BB | Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 119 | ||
| 52 | 4U27|1|BB | Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 119 | ||
| 53 | 4U26|1|BB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 119 | ||
| 54 | 4U24|1|BB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 119 | ||
| 55 | 4U1V|1|BB | Title: Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 119 | ||
| 56 | 4WWW|1|RB | Title: Crystal structure of the E. coli ribosome bound to CEM-101 | X-RAY DIFFRACTION | 3.1 | 118 | ||
| 57 | 4V7S|1|BB | Title: Crystal structure of the E. coli ribosome bound to telithromycin. | X-RAY DIFFRACTION | 3.25 | 118 | ||
| 58 | 4V6C|1|BB | Title: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.19 | 118 | ||
| 59 | 4V7T|1|BB | Title: Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-RAY DIFFRACTION | 3.19 | 118 | ||
| 60 | 4V7V|1|BB | Title: Crystal structure of the E. coli ribosome bound to clindamycin. | X-RAY DIFFRACTION | 3.29 | 118 | ||
| 61 | 4V7U|1|BB | Title: Crystal structure of the E. coli ribosome bound to erythromycin. | X-RAY DIFFRACTION | 3.1 | 118 | ||
| 62 | 4V85|1|BB | Title: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-RAY DIFFRACTION | 3.2 | 118 | ||
| 63 | 4V7V|1|DB | Title: Crystal structure of the E. coli ribosome bound to clindamycin. | X-RAY DIFFRACTION | 3.29 | 117 | ||
| 64 | 4V7T|1|DB | Title: Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-RAY DIFFRACTION | 3.19 | 117 | ||
| 65 | 4V6C|1|DB | Title: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.19 | 117 | ||
| 66 | 4V7S|1|DB | Title: Crystal structure of the E. coli ribosome bound to telithromycin. | X-RAY DIFFRACTION | 3.25 | 117 | ||
| 67 | 4WWW|1|YB | Title: Crystal structure of the E. coli ribosome bound to CEM-101 | X-RAY DIFFRACTION | 3.1 | 117 | ||
| 68 | 4V7U|1|DB | Title: Crystal structure of the E. coli ribosome bound to erythromycin. | X-RAY DIFFRACTION | 3.1 | 117 | ||
| 69 | 4YBB|1|CB | Title: High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 118 | ||
| 70 | 4WF1|1|DB | Title: Crystal structure of the E. coli ribosome bound to negamycin. | X-RAY DIFFRACTION | 3.09 | 118 | ||
| 71 | 4U26|1|DB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 118 | ||
| 72 | 4U24|1|DB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 73 | 4U25|1|DB | Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 74 | 4U27|1|DB | Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 118 | ||
| 75 | 4U1V|1|DB | Title: Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 118 | ||
| 76 | 4U20|1|DB | Title: Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 77 | 4U1U|1|DB | Title: Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 118 | ||
| 78 | 4V9D|1|DB | Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 118 | ||
| 79 | 4V9C|1|BB | Title: Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 118 | ||
| 80 | 4WOI|1|CB | Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 118 | ||
| 81 | 4V9P|1|EB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 82 | 4V9O|1|EB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 83 | 4V9P|1|AB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 84 | 4V9O|1|CB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 85 | 4V9O|1|AB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 86 | 4V9P|1|CB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 87 | 4V9P|1|GB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 88 | 4V9O|1|GB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 89 | 5U4I|1|B | Title: Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | ELECTRON MICROSCOPY | 3.5 | 118 |
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