NR_3.0_91531.7

Members (41)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|AA (rep)	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	4YBB\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	4WOI\|1\|DA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
4	4WOI\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
5	4V9P\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
6	4V9O\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
7	5J7L\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
8	4V9P\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
9	4V9P\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
10	4V9P\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
11	4V9O\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
12	5J91\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
13	4V9O\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
14	4U27\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
15	4YBB\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
16	4U1U\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
17	4U26\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
18	4V9D\|1\|AA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
19	4U24\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
20	4U25\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
21	4V9D\|1\|BA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
22	4U27\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
23	4V9O\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
24	4U20\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
25	4U1U\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
26	4U1V\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
27	4U25\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
28	4U26\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
29	5J91\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
30	4U24\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
31	4U1V\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
32	4U20\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
33	5J5B\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
34	5J5B\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
35	5AFI\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
36	5NWY\|1\|0	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
37	6H4N\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	2018-09-05
38	5WDT\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
39	5WFS\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
40	5MDV\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
41	5IQR\|1\|2	Small subunit ribosomal RNA	SSU rRNA	Escherichia coli	Bacteria	RF00177	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04

Release history

Release	9.16	9.17	9.18
Date	2018-11-16	2018-11-23	2018-11-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_91531.7	NR_3.0_91531.6	9.16	(41) 6H4N\|1\|a, 4U25\|1\|AA, 4WOI\|1\|AA, 5NWY\|1\|0, 4U20\|1\|CA, 4V9P\|1\|DA, 5J91\|1\|BA, 4U1V\|1\|CA, 4V9O\|1\|HA, 5J7L\|1\|AA, 4U1U\|1\|AA, 4V9O\|1\|BA, 5J5B\|1\|AA, 4V9D\|1\|AA, 4YBB\|1\|BA, 4U26\|1\|CA, 4U25\|1\|CA, 4WOI\|1\|DA, 5WDT\|1\|a, 4U24\|1\|AA, 4V9P\|1\|FA, 5MDV\|1\|2, 4U20\|1\|AA, 4V9P\|1\|BA, 5J7L\|1\|BA, 4U1U\|1\|CA, 4V9O\|1\|DA, 5J5B\|1\|BA, 4V9D\|1\|BA, 5AFI\|1\|a, 4U27\|1\|AA, 4U26\|1\|AA, 4YBB\|1\|AA, 5WFS\|1\|a, 4U24\|1\|CA, 4V9P\|1\|HA, 5J91\|1\|AA, 4U1V\|1\|AA, 4V9O\|1\|FA, 5IQR\|1\|2, 4U27\|1\|CA	(0)	(2) 3R8N\|1\|A, 3R8O\|1\|A

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V9P\|1\|FA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
2	4V9P\|1\|HA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
3	4V9O\|1\|HA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
4	5J7L\|1\|AA	Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1523
5	5J5B\|1\|AA	Title: Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1523
6	5J91\|1\|AA	Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1523
7	4YBB\|1\|AA	Title: High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1523
8	4U24\|1\|AA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1538
9	4U26\|1\|AA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1538
10	4U25\|1\|AA	Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1538
11	4U27\|1\|AA	Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1538
12	4U1V\|1\|AA	Title: Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1538
13	4U20\|1\|AA	Title: Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1538
14	4U1U\|1\|AA	Title: Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1538
15	4V9P\|1\|BA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
16	4V9P\|1\|DA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
17	4V9O\|1\|DA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
18	4V9O\|1\|BA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
19	4V9O\|1\|FA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
20	4V9D\|1\|AA	Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1538
21	5J7L\|1\|BA	Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1522
22	5J91\|1\|BA	Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1522
23	5J5B\|1\|BA	Title: Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1522
24	4YBB\|1\|BA	Title: High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1522
25	4U24\|1\|CA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1539
26	4U26\|1\|CA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1539
27	4U25\|1\|CA	Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1539
28	4U27\|1\|CA	Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1539
29	4U1V\|1\|CA	Title: Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1539
30	4U20\|1\|CA	Title: Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1539
31	4U1U\|1\|CA	Title: Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1539
32	4V9D\|1\|BA	Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1539
33	5IQR\|1\|2	Title: Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	1522
34	5MDV\|1\|2	Title: Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	1523
35	5NWY\|1\|0	Title: 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	1539
36	6H4N\|1\|a	Title: Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	1534
37	5WFS\|1\|a	Title: 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	1529
38	5WDT\|1\|a	Title: 70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	1529
39	5AFI\|1\|a	Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	1528
40	4WOI\|1\|DA	Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1539
41	4WOI\|1\|AA	Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1538

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_91531.7 Obsolete

Release history

Parents

Children