RNA 3D Hub //

Equivalence class NR_3.0_71282.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12C4Q|1|R (rep)5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
22C4Y|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
32C4Q|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
42BU1|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
52C4Y|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
62C4Z|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
72C4Z|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
82C51|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
92BU1|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
102C50|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
112C51|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
122C50|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
131ZDH|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
141ZDH|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
152BQ5|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
162BNY|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
172BQ5|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
182BNY|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
191AQ4|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
201AQ3|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24
211AQ3|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24
221AQ4|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
232IZ9|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
242IZ9|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
252IZM|1|R5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
262IZM|1|S5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
271ZDI|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
281ZDK|1|RRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
291ZDK|1|SRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
301ZDI|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21

Release history

Release9.169.179.189.199.209.219.229.239.24
Date2018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_71282.3NR_3.0_71282.29.16(30) 2BQ5|1|S, 2IZM|1|S, 2BNY|1|R, 2IZ9|1|R, 1ZDK|1|R, 2C51|1|R, 1ZDH|1|S, 2C4Z|1|S, 1AQ4|1|S, 2C4Y|1|S, 1AQ3|1|R, 2C4Q|1|R, 2BU1|1|R, 2BNY|1|S, 2IZ9|1|S, 1ZDK|1|S, 2C51|1|S, 1ZDI|1|R, 2C50|1|R, 1ZDH|1|R, 2C4Z|1|R, 1AQ3|1|S, 2C4Q|1|S, 2BU1|1|S, 2BQ5|1|R, 2IZM|1|R, 1ZDI|1|S, 2C50|1|S, 1AQ4|1|R, 2C4Y|1|R(0) (2) 1KUO|1|R, 1KUO|1|S

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
12BQ5|1|STitle: MS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9117
22BNY|1|STitle: MS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION313
32C4Y|1|STitle: MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6812
42C4Z|1|STitle: MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.611
52C51|1|STitle: MS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.813
62C50|1|STitle: MS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6513
72BU1|1|STitle: MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
82C4Q|1|STitle: MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
92BU1|1|RTitle: MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
102C4Q|1|RTitle: MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
112IZM|1|STitle: MS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
121AQ3|1|STitle: BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.812
131AQ4|1|STitle: STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION314
141ZDI|1|STitle: RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
151ZDH|1|STitle: MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
161ZDK|1|STitle: STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
172IZM|1|RTitle: MS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
181ZDH|1|RTitle: MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
191ZDK|1|RTitle: STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
202BNY|1|RTitle: MS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION315
212C51|1|RTitle: MS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.815
222C50|1|RTitle: MS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6514
231ZDI|1|RTitle: RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.716
241AQ4|1|RTitle: STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION316
251AQ3|1|RTitle: BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.816
262BQ5|1|RTitle: MS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9119
272C4Y|1|RTitle: MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6816
282C4Z|1|RTitle: MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.615
292IZ9|1|RTitle: MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514
302IZ9|1|STitle: MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0310 s