Equivalence class NR_3.0_50616.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5DOY|1|2x (rep) | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 2 | 5DOY|1|1x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 3 | 5IBB|1|2L | Transfer RNA | tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 4 | 5J4B|1|2x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 5 | 5J4B|1|1x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 6 | 5HD1|1|2x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
| 7 | 5HD1|1|1x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
| 8 | 5IBB|1|2K | Transfer RNA | tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 9 | 5F8K|1|2x | Transfer RNA | tRNAiMet, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
| 10 | 5F8K|1|1x | Transfer RNA | tRNAiMet, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
| 11 | 5AFI|1|v | Transfer RNA | P-site fMet-tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 12 | 5IQR|1|5 | Transfer RNA | P-site fMet-tRNA(fMet), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
| 13 | 5AFI|1|w | Transfer RNA | P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_50616.1 | NR_3.0_18070.1 | 6.0 | (13) 5HD1|1|2x, 5J4B|1|1x, 5IBB|1|2L, 5AFI|1|w, 5AFI|1|v, 5F8K|1|2x, 5DOY|1|2x, 5IBB|1|2K, 5HD1|1|1x, 5IQR|1|5, 5DOY|1|1x, 5F8K|1|1x, 5J4B|1|2x | (0) | (60) 5IB7|1|2K, 4V7L|1|AX, 4Y4P|1|1x, 4Z3S|1|1x, 2FMT|1|C, 1VY7|1|AX, 4W2G|1|AX, 4W2F|1|AX, 5HCQ|1|1x, 5HCP|1|1x, 4V67|1|AY, 4V67|1|CY, 4WSD|1|2K, 4WQY|1|BX, 1VY5|1|AX, 1VY4|1|AX, 4V8D|1|AC, 4V8B|1|CC, 4Z8C|1|1x, 5HAU|1|1w, 4V51|1|AV, 4LNT|1|QV, 4W2I|1|AX, 4W2H|1|AX, 4V51|1|CV, 4WPO|1|DX, 5J4C|1|2x, 4WQY|1|DX, 1VY5|1|CX, 1VY4|1|CX, 4V8D|1|CC, 4V8B|1|CD, 4Z8C|1|2x, 4Z3S|1|2x, 2FMT|1|D, 4LNT|1|XV, 4W2I|1|CX, 4W2H|1|CX, 5IB7|1|2L, 5HCR|1|2x, 4V7L|1|CX, 4V67|1|CZ, 4WSD|1|2L, 4Y4P|1|2x, 1VY7|1|CX, 1VY6|1|CX, 4W2F|1|CX, 4V9R|1|CX, 5HCP|1|2x, 5HCR|1|1x, 4V8B|1|AC, 1VY6|1|AX, 4WPO|1|BX, 5HAU|1|2w, 4V67|1|AZ, 4W2G|1|CX, 4V9R|1|AX, 5J4C|1|1x, 4V8B|1|AD, 5HCQ|1|2x |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_50616.1 | NR_3.0_49169.1 | 7.0 | (13) 5IQR|1|5, 5DOY|1|2x, 5HD1|1|1x, 5AFI|1|w, 5IBB|1|2K, 5F8K|1|1x, 5J4B|1|1x, 5HD1|1|2x, 5AFI|1|v, 5IBB|1|2L, 5J4B|1|2x, 5DOY|1|1x, 5F8K|1|2x | (0) | (60) 4V7L|1|AX, 1VY6|1|AX, 1VY4|1|CX, 4Y4P|1|2x, 5J4C|1|1x, 4WSD|1|2K, 5HCR|1|2x, 4WPO|1|DX, 4V8B|1|CD, 4W2I|1|AX, 4V8B|1|AC, 4V67|1|CZ, 5J4C|1|2x, 4V67|1|AY, 5IB7|1|2K, 4LNT|1|XV, 5HCQ|1|2x, 4WQY|1|DX, 5HCP|1|1x, 4WPO|1|BX, 4W2H|1|CX, 4V67|1|AZ, 4W2G|1|AX, 4V51|1|AV, 4V9R|1|CX, 2FMT|1|D, 1VY7|1|AX, 5HCQ|1|1x, 5HAU|1|2w, 4W2G|1|CX, 4Z8C|1|1x, 4W2F|1|AX, 4V8D|1|CC, 2FMT|1|C, 1VY6|1|CX, 4Z8C|1|2x, 1VY5|1|AX, 4Z3S|1|2x, 4Y4P|1|1x, 4V8D|1|AC, 4V8B|1|AD, 1VY7|1|CX, 1VY4|1|AX, 5IB7|1|2L, 5HCR|1|1x, 4V8B|1|CC, 4V7L|1|CX, 4V67|1|CY, 4V51|1|CV, 4LNT|1|QV, 4WQY|1|BX, 4W2I|1|CX, 4W2H|1|AX, 4W2F|1|CX, 4V9R|1|AX, 5HCP|1|2x, 5HAU|1|1w, 4Z3S|1|1x, 4WSD|1|2L, 1VY5|1|CX |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5AFI|1|w | Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | ||
| 2 | 5DOY|1|1x | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | ||
| 3 | 5HD1|1|2x | Title: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 72 | ||
| 4 | 5HD1|1|1x | Title: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 72 | ||
| 5 | 5IBB|1|2K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 72 | ||
| 6 | 5AFI|1|v | Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | ||
| 7 | 5J4B|1|1x | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | ||
| 8 | 5F8K|1|2x | Title: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | ||
| 9 | 5F8K|1|1x | Title: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | ||
| 10 | 5IBB|1|2L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 71 | ||
| 11 | 5DOY|1|2x | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | ||
| 12 | 5J4B|1|2x | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | ||
| 13 | 5IQR|1|5 | Title: Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 72 |
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