NR_3.0_43006.7

Members (41)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	4YBB\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	4WOI\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
4	4WOI\|1\|CA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
5	5J91\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
6	4V9P\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
7	4V9P\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
8	4V9P\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
9	4V9P\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
10	4V9D\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
11	4V9O\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
12	4V9O\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
13	4V9O\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
14	5J7L\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
15	4U27\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
16	4U24\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
17	4U25\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
18	4V9D\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
19	4U26\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
20	4V9O\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
21	4U1U\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
22	4U1V\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
23	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
24	4U20\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
25	4U27\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
26	4U25\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
27	4U1U\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
28	4U1V\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
29	4U24\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
30	4U26\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
31	4U20\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
32	5J91\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
33	5J5B\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
34	5J5B\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
35	5AFI\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
36	5NWY\|1\|N	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
37	6H4N\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	2018-09-05
38	5MDV\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
39	5WFS\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
40	5WDT\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
41	5IQR\|1\|1	Large subunit ribosomal RNA	LSU rRNA	Escherichia coli	Bacteria	RF02541	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04

Release history

Release	9.16	9.17	9.18
Date	2018-11-16	2018-11-23	2018-11-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_43006.7	NR_3.0_43006.6	9.16	(41) 6H4N\|1\|A, 5IQR\|1\|1, 5AFI\|1\|A, 4YBB\|1\|DA, 4YBB\|1\|CA, 4WOI\|1\|CA, 4WOI\|1\|BA, 4V9P\|1\|GA, 4V9P\|1\|EA, 5J5B\|1\|CA, 5J5B\|1\|DA, 5WFS\|1\|A, 5WDT\|1\|A, 5NWY\|1\|N, 5MDV\|1\|1, 5J91\|1\|DA, 5J91\|1\|CA, 5J7L\|1\|DA, 5J7L\|1\|CA, 4V9P\|1\|CA, 4V9P\|1\|AA, 4V9O\|1\|GA, 4U25\|1\|BA, 4U24\|1\|DA, 4U24\|1\|BA, 4U20\|1\|DA, 4U20\|1\|BA, 4U1V\|1\|DA, 4U1V\|1\|BA, 4U1U\|1\|DA, 4U25\|1\|DA, 4U26\|1\|BA, 4V9O\|1\|EA, 4V9O\|1\|CA, 4V9O\|1\|AA, 4V9D\|1\|DA, 4V9D\|1\|CA, 4U27\|1\|DA, 4U27\|1\|BA, 4U26\|1\|DA, 4U1U\|1\|BA	(0)	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5J7L\|1\|DA	Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2886
2	5J91\|1\|DA	Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2886
3	5J5B\|1\|DA	Title: Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2886
4	4YBB\|1\|DA	Title: High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883
5	5J7L\|1\|CA	Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2875
6	5J91\|1\|CA	Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2876
7	5J5B\|1\|CA	Title: Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2876
8	4YBB\|1\|CA	Title: High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876
9	4U24\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
10	4U26\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
11	4U25\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
12	4U27\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
13	4U1V\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
14	4U20\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
15	4U1U\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
16	4V9D\|1\|DA	Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2896
17	4WOI\|1\|CA	Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897
18	4V9P\|1\|GA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
19	4V9O\|1\|GA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
20	4V9O\|1\|EA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
21	4V9P\|1\|EA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
22	4V9P\|1\|AA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
23	4V9O\|1\|AA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
24	4V9O\|1\|CA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
25	4V9P\|1\|CA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
26	5WDT\|1\|A	Title: 70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	2876
27	5WFS\|1\|A	Title: 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	2876
28	5AFI\|1\|A	Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	2876
29	6H4N\|1\|A	Title: Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	2900
30	5NWY\|1\|N	Title: 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	2898
31	5MDV\|1\|1	Title: Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	2881
32	5IQR\|1\|1	Title: Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	2882
33	4U24\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
34	4U26\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
35	4U25\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
36	4U27\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
37	4U1V\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
38	4U20\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
39	4U1U\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
40	4V9D\|1\|CA	Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2897
41	4WOI\|1\|BA	Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_43006.7 Obsolete

Release history

Parents

Children