Equivalence class NR_3.0_37074.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
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1 | 4U26|1|BB (rep) | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
2 | 4U20|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
3 | 4U27|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
4 | 4U24|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
5 | 4U1U|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
6 | 4U25|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
7 | 4U1V|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
8 | 4U1U|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
9 | 4U20|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
10 | 4V9D|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
11 | 4V9P|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
12 | 4U27|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
13 | 4U25|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
14 | 4V9D|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
15 | 4V9O|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
16 | 4U24|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
17 | 4U1V|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
18 | 4V9O|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
19 | 4U26|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
20 | 4V9P|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
21 | 4V9P|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
22 | 4V9O|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
23 | 4V9O|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
24 | 4V9P|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
Release history
Release | 2.0 |
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Date | 2014-12-05 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 4U26|1|DB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 118 | ||
2 | 4U24|1|DB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 118 | ||
3 | 4U25|1|DB | Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 118 | ||
4 | 4U27|1|DB | Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 118 | ||
5 | 4U1V|1|DB | Title: Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 118 | ||
6 | 4U20|1|DB | Title: Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 118 | ||
7 | 4U1U|1|DB | Title: Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 118 | ||
8 | 4V9D|1|DB | Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 118 | ||
9 | 4V9P|1|EB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
10 | 4V9O|1|EB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
11 | 4V9D|1|CB | Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 119 | ||
12 | 4U1U|1|BB | Title: Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 119 | ||
13 | 4U20|1|BB | Title: Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 119 | ||
14 | 4U1V|1|BB | Title: Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 119 | ||
15 | 4U24|1|BB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 119 | ||
16 | 4U26|1|BB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 119 | ||
17 | 4U27|1|BB | Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 119 | ||
18 | 4U25|1|BB | Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 119 | ||
19 | 4V9P|1|AB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
20 | 4V9O|1|CB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
21 | 4V9O|1|AB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
22 | 4V9P|1|CB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
23 | 4V9P|1|GB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
24 | 4V9O|1|GB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 |
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