NR_3.0_29951.1

Members (32)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J91\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
2	4YBB\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	5J91\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
4	4V9P\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
5	4V9O\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
6	4V9D\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
7	4U27\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
8	4U25\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
9	5IQR\|1\|1	Large subunit ribosomal RNA	LSU rRNA	Escherichia coli	Bacteria	RF02541	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
10	4U24\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
11	4V9P\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
12	4V9P\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
13	4V9O\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
14	4U1U\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
15	4V9O\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
16	4U1V\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
17	4V9P\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
18	4U26\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
19	4U20\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
20	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
21	4WOI\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
22	5AFI\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
23	4V9D\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
24	4U1U\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
25	4U20\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
26	4WOI\|1\|CA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
27	4U1V\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
28	4U25\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
29	4V9O\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
30	4U27\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
31	4U24\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
32	4U26\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30

Release history

Release	7.0
Date	2017-04-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_29951.1	NR_3.0_17477.1	7.0	(4) 5J91\|1\|CA, 5AFI\|1\|A, 5J91\|1\|DA, 5IQR\|1\|1	(28) 4U27\|1\|BA, 4U20\|1\|BA, 4V9O\|1\|AA, 4U25\|1\|BA, 4U26\|1\|DA, 4U1V\|1\|DA, 4V9D\|1\|DA, 4U24\|1\|DA, 4U26\|1\|BA, 4U1V\|1\|BA, 4V9D\|1\|CA, 4U24\|1\|BA, 4U25\|1\|DA, 4U1U\|1\|DA, 4U27\|1\|DA, 4U20\|1\|DA, 4U1U\|1\|BA, 4YBB\|1\|DA, 4YBB\|1\|CA, 4WOI\|1\|CA, 4WOI\|1\|BA, 4V9P\|1\|GA, 4V9P\|1\|EA, 4V9P\|1\|CA, 4V9P\|1\|AA, 4V9O\|1\|GA, 4V9O\|1\|EA, 4V9O\|1\|CA	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_29951.1	NR_3.0_43006.1	8.0	(32) 4U1V\|1\|DA, 4V9P\|1\|EA, 4U24\|1\|BA, 4WOI\|1\|CA, 4U25\|1\|DA, 5IQR\|1\|1, 4U27\|1\|DA, 4V9O\|1\|AA, 4U1U\|1\|BA, 4V9O\|1\|GA, 5AFI\|1\|A, 4U27\|1\|BA, 5J91\|1\|DA, 4V9D\|1\|DA, 4U1V\|1\|BA, 4V9O\|1\|EA, 4V9P\|1\|CA, 4U20\|1\|DA, 4WOI\|1\|BA, 4U25\|1\|BA, 4YBB\|1\|DA, 4U26\|1\|DA, 5J91\|1\|CA, 4V9D\|1\|CA, 4V9O\|1\|CA, 4U1U\|1\|DA, 4V9P\|1\|AA, 4U20\|1\|BA, 4V9P\|1\|GA, 4U24\|1\|DA, 4YBB\|1\|CA, 4U26\|1\|BA	(0)	(5) 5J7L\|1\|CA, 5J7L\|1\|DA, 5MDV\|1\|1, 5J5B\|1\|CA, 5J5B\|1\|DA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4WOI\|1\|CA	Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897
2	4V9D\|1\|DA	Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2896
3	4U1U\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
4	4U20\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
5	4U1V\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
6	4U25\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
7	4U27\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
8	4U26\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
9	4U24\|1\|DA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
10	4YBB\|1\|CA	Title: High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876
11	5J91\|1\|CA	Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2876
12	5J91\|1\|DA	Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2886
13	4YBB\|1\|DA	Title: High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883
14	4V9P\|1\|EA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
15	4V9O\|1\|EA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
16	4V9O\|1\|GA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
17	4V9P\|1\|GA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
18	4V9O\|1\|AA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
19	4V9P\|1\|AA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
20	4V9P\|1\|CA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
21	4V9O\|1\|CA	Title: Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
22	5AFI\|1\|A	Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	2876
23	5IQR\|1\|1	Title: Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	2882
24	4U24\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
25	4U26\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
26	4U25\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
27	4U27\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
28	4U20\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
29	4U1V\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
30	4U1U\|1\|BA	Title: Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
31	4V9D\|1\|CA	Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2897
32	4WOI\|1\|BA	Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_29951.1 Obsolete

Release history

Parents

Children