Equivalence class NR_3.0_09611.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A5+ 4V88|1|A8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 2 | 4V88|1|A1+ 4V88|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 3 | 4U4U|1|1+ 4U4U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 4 | 4U4U|1|5+ 4U4U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_09611.1 | NR_3.0_26492.2 | 6.0 | (4) 4V88|1|A1+4V88|1|A4, 4U4U|1|5+4U4U|1|8, 4V88|1|A5+4V88|1|A8, 4U4U|1|1+4U4U|1|4 | (0) | (10) 4U3U|1|1+4U3U|1|4, 4U4R|1|5+4U4R|1|8, 4U52|1|5+4U52|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4R|1|1+4U4R|1|4, 4U3M|1|5+4U3M|1|8, 4U52|1|1+4U52|1|4, 4U3U|1|5+4U3U|1|8, 4U4Q|1|5+4U4Q|1|8, 4U3M|1|1+4U3M|1|4 |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_09611.1 | NR_3.0_13062.1 | 7.0 | (4) 4U4U|1|1+4U4U|1|4, 4V88|1|A1+4V88|1|A4, 4V88|1|A5+4V88|1|A8, 4U4U|1|5+4U4U|1|8 | (0) | (10) 4U4Q|1|1+4U4Q|1|4, 4U3M|1|1+4U3M|1|4, 4U4R|1|1+4U4R|1|4, 4U3U|1|5+4U3U|1|8, 4U52|1|5+4U52|1|8, 4U4Q|1|5+4U4Q|1|8, 4U3U|1|1+4U3U|1|4, 4U52|1|1+4U52|1|4, 4U3M|1|5+4U3M|1|8, 4U4R|1|5+4U4R|1|8 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4U4U|1|5+4U4U|1|8 | Title: Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 | ||
| 2 | 4V88|1|A5+4V88|1|A8 | Title: The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3150 | ||
| 3 | 4V88|1|A1+4V88|1|A4 | Title: The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3149 | ||
| 4 | 4U4U|1|1+4U4U|1|4 | Title: Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
Coloring options: