Equivalence class NR_3.0_07547.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5J91|1|CB (rep) | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
| 2 | 4U24|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 3 | 4U20|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 4 | 4YBB|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
| 5 | 4U26|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 6 | 4U27|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 7 | 4U25|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
| 8 | 4U1U|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
| 9 | 4U1V|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
| 10 | 4V9O|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 11 | 4V9D|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 12 | 5J7L|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
| 13 | 4U1V|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
| 14 | 4U20|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 15 | 4V9D|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 16 | 4U25|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
| 17 | 4V9P|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 18 | 4U24|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
| 19 | 4V9O|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 20 | 4V9P|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 21 | 4U1U|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
| 22 | 4U26|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 23 | 4V9P|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 24 | 4V9O|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 25 | 4V9P|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 26 | 5J91|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
| 27 | 4V9O|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
| 28 | 4WOI|1|CB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
| 29 | 4U27|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
| 30 | 4WOI|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
| 31 | 4YBB|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
| 32 | 5J7L|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
| 33 | 5IQR|1|3 | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
| 34 | 5MDV|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | Electron microscopy | 2.97 | 2016-12-14 |
| 35 | 5AFI|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 36 | 5J5B|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
| 37 | 5J5B|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
Release history
| Release | 8.0 |
|---|---|
| Date | 2017-04-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_07547.1 | NR_3.0_91789.1 | 8.0 | (32) 4V9D|1|CB, 4U1U|1|DB, 4V9P|1|AB, 4U25|1|BB, 4YBB|1|DB, 4U24|1|DB, 4YBB|1|CB, 4U27|1|DB, 4U1U|1|BB, 4V9O|1|GB, 4U24|1|BB, 4WOI|1|CB, 4U27|1|BB, 5J91|1|DB, 4V9O|1|EB, 4U20|1|DB, 4WOI|1|BB, 4U26|1|DB, 5J91|1|CB, 4V9O|1|CB, 4U20|1|BB, 4V9P|1|GB, 4U26|1|BB, 5IQR|1|3, 4V9O|1|AB, 4U1V|1|DB, 4V9P|1|EB, 4U25|1|DB, 5AFI|1|B, 4V9D|1|DB, 4U1V|1|BB, 4V9P|1|CB | (5) 5J7L|1|CB, 5J7L|1|DB, 5MDV|1|3, 5J5B|1|CB, 5J5B|1|DB | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_07547.1 | NR_3.0_07547.2 | 9.0 | (37) 4U1U|1|BB, 4V9P|1|AB, 4V9P|1|CB, 4V9P|1|EB, 4V9P|1|GB, 4WOI|1|BB, 4WOI|1|CB, 4YBB|1|CB, 4YBB|1|DB, 5AFI|1|B, 5IQR|1|3, 5J5B|1|CB, 5J5B|1|DB, 5J7L|1|CB, 5J7L|1|DB, 5J91|1|CB, 5J91|1|DB, 4V9O|1|GB, 4V9O|1|EB, 4V9O|1|CB, 4U1U|1|DB, 4U1V|1|BB, 4U1V|1|DB, 4U20|1|BB, 4U20|1|DB, 4U24|1|BB, 4U24|1|DB, 4U25|1|BB, 4U25|1|DB, 4U26|1|BB, 4U26|1|DB, 4U27|1|BB, 4U27|1|DB, 4V9D|1|CB, 4V9D|1|DB, 4V9O|1|AB, 5MDV|1|3 | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4WOI|1|CB | Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 118 | ||
| 2 | 4V9P|1|EB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 3 | 4V9O|1|EB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 4 | 4V9D|1|DB | Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 118 | ||
| 5 | 4U1U|1|DB | Title: Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 118 | ||
| 6 | 4U20|1|DB | Title: Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 7 | 4U1V|1|DB | Title: Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 118 | ||
| 8 | 4U27|1|DB | Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 118 | ||
| 9 | 4U25|1|DB | Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 10 | 4U24|1|DB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 11 | 4U26|1|DB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 118 | ||
| 12 | 4YBB|1|CB | Title: High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 118 | ||
| 13 | 5J5B|1|CB | Title: Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 118 | ||
| 14 | 5J91|1|CB | Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 118 | ||
| 15 | 5J7L|1|CB | Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 118 | ||
| 16 | 5MDV|1|3 | Title: Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 120 | ||
| 17 | 5IQR|1|3 | Title: Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 118 | ||
| 18 | 5AFI|1|B | Title: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 120 | ||
| 19 | 5J7L|1|DB | Title: Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 120 | ||
| 20 | 5J5B|1|DB | Title: Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 120 | ||
| 21 | 5J91|1|DB | Title: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 120 | ||
| 22 | 4YBB|1|DB | Title: High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 120 | ||
| 23 | 4U26|1|BB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 119 | ||
| 24 | 4U24|1|BB | Title: Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 119 | ||
| 25 | 4U25|1|BB | Title: Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 119 | ||
| 26 | 4U27|1|BB | Title: Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 119 | ||
| 27 | 4U1V|1|BB | Title: Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 119 | ||
| 28 | 4U20|1|BB | Title: Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 119 | ||
| 29 | 4U1U|1|BB | Title: Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 119 | ||
| 30 | 4V9D|1|CB | Title: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 119 | ||
| 31 | 4WOI|1|BB | Title: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 119 | ||
| 32 | 4V9O|1|AB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 33 | 4V9O|1|CB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 34 | 4V9P|1|AB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 35 | 4V9P|1|CB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 36 | 4V9P|1|GB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | ||
| 37 | 4V9O|1|GB | Title: Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 |
Coloring options: