#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V49|1|AW (rep)Transfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
24V49|1|AVTransfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
31ZO3|1|ATransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
41ZO3|1|BTransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
51ZO1|1|FTransfer RNAP/I-site tRNAEscherichia coliBacteriaRF00005IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexElectron microscopy13.82005-06-14
64V65|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
73WC2|1|PTransfer RNA76mer-tRNARF00005Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
84V65|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
93DEG|1|ATransfer RNAA/L-tRNAEscherichia coliBacteriaRF00005Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPElectron microscopy10.92008-08-19
104V42|1|ABTransfer RNATRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSRF00005Crystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
111JGP|1|BTransfer RNAtRNA(Phe), MESSENGER RNA MV36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
121JGQ|1|BTransfer RNAtRNA(Phe)RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
131JGO|1|BTransfer RNAtRNA(Phe), MESSENGER RNA MK27RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
141MJ1|1|DTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
151TTT|1|FTransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
164V4T|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
174V4R|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
184V4S|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
194V4W|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
204V4V|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
214V4V|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
224V4W|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
234V4V|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
244V69|1|AYTransfer RNAA/T-site tRNA Phe, mRNARF00005Ternary complex-bound E.coli 70S ribosome.Electron microscopy6.72014-07-09
251EVV|1|ATransfer RNAPHENYLALANINE TRANSFER RNASaccharomycesEukaryaRF00005CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-ray diffraction22000-05-01
264V42|1|ACTransfer RNATRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSRF00005Crystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
271ML5|1|BTransfer RNAT-RNA(PHE), A- AND P-SITE MESSENGER RNA CODONSEscherichia coliBacteriaRF00005Structure of the E. coli ribosomal termination complex with release factor 2Electron microscopy142003-01-14
281MJ1|1|CTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
291JGP|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MV36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
301JGQ|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MF36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
311JGO|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MK27RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
321SZ1|1|ETransfer RNAT-RNA (76-MER)RF00005Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
331TTT|1|ETransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
341SZ1|1|FTransfer RNAT-RNA (76-MER)RF00005Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
354V66|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
364V4W|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
373WC2|1|QTransfer RNA76mer-tRNARF00005Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
384V66|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
391TTT|1|DTransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
404V66|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
414V65|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
424V4S|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
434V4T|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
444V4R|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
454V48|1|A6Transfer RNAtRNA-PHEEscherichia coliBacteriaRF00005Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeElectron microscopy11.52014-07-09
461QZB|1|BTransfer RNAPhe-tRNARF00005Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateElectron microscopy92003-11-04
471QZA|1|BTransfer RNAPhe-tRNARF00005Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeElectron microscopy102003-11-04
483EP2|1|YTransfer RNAtRNAEscherichia coliBacteriaRF00005Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMElectron microscopy92008-12-16
493EQ3|1|YTransfer RNAtRNAEscherichia coliBacteriaRF00005Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMElectron microscopy92008-12-16

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13DEG|1|ATitle: Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.962
23WC2|1|QTitle: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6473
33WC2|1|PTitle: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6474
41JGP|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
54V42|1|ACTitle: Crystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
61JGO|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
71JGQ|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
81MJ1|1|CTitle: FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
91ML5|1|BTitle: Structure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY1462
104V49|1|AVTitle: Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
114V4S|1|AVTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7676
124V4R|1|AVTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.976
134V4T|1|AVTitle: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4676
144V66|1|APTitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
154V65|1|APTitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
164V66|1|AATitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
171SZ1|1|ETitle: Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
181SZ1|1|FTitle: Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
191JGO|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
201JGQ|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
214V42|1|ABTitle: Crystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
221JGP|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
234V49|1|AWTitle: Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
244V4W|1|AUTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
254V4V|1|AUTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
264V4V|1|AWTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
274V4V|1|AVTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
281ZO1|1|FTitle: IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexELECTRON MICROSCOPY13.876
291ZO3|1|ATitle: The P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
301ZO3|1|BTitle: The P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
311MJ1|1|DTitle: FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
324V4W|1|AVTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
334V4W|1|AWTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
341EVV|1|ATitle: CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION262
354V66|1|AETitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY976
364V65|1|AETitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY976
374V4T|1|AWTitle: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4673
384V4R|1|AWTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.973
394V4S|1|AWTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7673
401TTT|1|DTitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
411TTT|1|ETitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
421TTT|1|FTitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
434V69|1|AYTitle: Ternary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
444V65|1|AATitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
451QZB|1|BTitle: Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY975
463EP2|1|YTitle: Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974
474V48|1|A6Title: Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.576
483EQ3|1|YTitle: Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974
491QZA|1|BTitle: Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY1075

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