#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11EVV|1|A (rep)Transfer RNAPHENYLALANINE TRANSFER RNASaccharomycesEukaryaRF00005CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-ray diffraction22000-05-01
23WC2|1|PTransfer RNA76mer-tRNARF00005Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
33WC2|1|QTransfer RNA76mer-tRNARF00005Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
44V4R|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
51SZ1|1|FTransfer RNAT-RNA (76-MER)RF00005Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
61SZ1|1|ETransfer RNAT-RNA (76-MER)RF00005Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
74V4S|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
84V4T|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
94V4R|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
104V4S|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
114V4T|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
124V49|1|AWTransfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
134V49|1|AVTransfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
141TTT|1|FTransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
151TTT|1|DTransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
161TTT|1|ETransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
171JGQ|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MF36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
181JGQ|1|BTransfer RNAtRNA(Phe)RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
194V42|1|ACTransfer RNATRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSRF00005Crystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
204V42|1|ABTransfer RNATRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSRF00005Crystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
211JGO|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MK27RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
221JGO|1|BTransfer RNAtRNA(Phe), MESSENGER RNA MK27RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
234V69|1|AYTransfer RNAA/T-site tRNA Phe, mRNARF00005Ternary complex-bound E.coli 70S ribosome.Electron microscopy6.72014-07-09
241JGP|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MV36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
251JGP|1|BTransfer RNAtRNA(Phe), MESSENGER RNA MV36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
261QZB|1|BTransfer RNAPhe-tRNARF00005Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateElectron microscopy92003-11-04
274V66|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
284V65|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
294V65|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
304V66|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
314V66|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
324V65|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
331QZA|1|BTransfer RNAPhe-tRNARF00005Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeElectron microscopy102003-11-04
343DEG|1|ATransfer RNAA/L-tRNAEscherichia coliBacteriaRF00005Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPElectron microscopy10.92008-08-19
351MJ1|1|CTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
361ZO1|1|FTransfer RNAP/I-site tRNAEscherichia coliBacteriaRF00005IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexElectron microscopy13.82005-06-14
371ZO3|1|ATransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
381ZO3|1|BTransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
391ML5|1|BTransfer RNAT-RNA(PHE), A- AND P-SITE MESSENGER RNA CODONSEscherichia coliBacteriaRF00005Structure of the E. coli ribosomal termination complex with release factor 2Electron microscopy142003-01-14
401MJ1|1|DTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
414V4W|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
424V4W|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
434V4W|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
444V4V|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
454V4V|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
464V4V|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09

Release history

Release9.119.129.139.149.15
Date2018-01-282018-04-012018-04-012018-09-142018-11-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13DEG|1|ATitle: Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.962
21QZA|1|BTitle: Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY1075
34V65|1|AATitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
41TTT|1|DTitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
51TTT|1|ETitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
61TTT|1|FTitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
74V69|1|AYTitle: Ternary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
81QZB|1|BTitle: Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY975
94V66|1|AETitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY976
104V65|1|AETitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY976
114V4T|1|AWTitle: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4673
124V4R|1|AWTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.973
134V4S|1|AWTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7673
141EVV|1|ATitle: CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION262
154V4W|1|AVTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
164V4W|1|AWTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
171MJ1|1|DTitle: FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
184V4V|1|AVTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
194V4V|1|AWTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
204V4V|1|AUTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
214V4W|1|AUTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
221ZO3|1|ATitle: The P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
231ZO1|1|FTitle: IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexELECTRON MICROSCOPY13.876
241ZO3|1|BTitle: The P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
254V49|1|AWTitle: Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
261JGO|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
274V42|1|ABTitle: Crystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
281JGQ|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
291JGP|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
301SZ1|1|FTitle: Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
311SZ1|1|ETitle: Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
324V66|1|AATitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
334V65|1|APTitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
344V66|1|APTitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
354V4T|1|AVTitle: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4676
364V4S|1|AVTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7676
374V4R|1|AVTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.976
384V49|1|AVTitle: Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
391JGQ|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
404V42|1|ACTitle: Crystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
411JGP|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
421JGO|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
431MJ1|1|CTitle: FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
441ML5|1|BTitle: Structure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY1462
453WC2|1|QTitle: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6473
463WC2|1|PTitle: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6474

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0046 s