#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V4V|1|AU (rep)Transfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
24V4V|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
34V4V|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy152014-07-09
44V4W|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
54V4W|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
64V4W|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy152014-07-09
71MJ1|1|DTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
81ML5|1|BTransfer RNAT-RNA(PHE), A- AND P-SITE MESSENGER RNA CODONSEscherichia coliBacteriaRF00005Structure of the E. coli ribosomal termination complex with release factor 2Electron microscopy142003-01-14
91ZO3|1|BTransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
101ZO3|1|ATransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.82005-06-14
111ZO1|1|FTransfer RNAP/I-site tRNAEscherichia coliBacteriaRF00005IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexElectron microscopy13.82005-06-14
121MJ1|1|CTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy132002-11-01
133DEG|1|ATransfer RNAA/L-tRNAEscherichia coliBacteriaRF00005Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPElectron microscopy10.92008-08-19
141QZA|1|BTransfer RNAPhe-tRNARF00005Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeElectron microscopy102003-11-04
154V66|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
164V65|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
174V66|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
184V65|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
194V65|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy92014-07-09
204V66|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy92014-07-09
211QZB|1|BTransfer RNAPhe-tRNARF00005Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateElectron microscopy92003-11-04
221JGP|1|BTransfer RNAtRNA(Phe), MESSENGER RNA MV36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
231JGP|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MV36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction72001-07-20
244V69|1|AYTransfer RNAA/T-site tRNA Phe, mRNARF00005Ternary complex-bound E.coli 70S ribosome.Electron microscopy6.72014-07-09
251JGO|1|BTransfer RNAtRNA(Phe), MESSENGER RNA MK27RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
261JGO|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MK27RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction5.62001-07-20
274V42|1|ABTransfer RNATRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSRF00005Crystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
284V42|1|ACTransfer RNATRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSRF00005Crystal structure of the ribosome at 5.5 A resolution.X-ray diffraction5.52014-07-09
291JGQ|1|BTransfer RNAtRNA(Phe)RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
301JGQ|1|CTransfer RNAtRNA(Phe), MESSENGER RNA MF36RF00005The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-ray diffraction52001-07-20
311TTT|1|ETransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
321TTT|1|DTransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
331TTT|1|FTransfer RNATRANSFER RIBONUCLEIC ACID (YEAST, PHE)RF00005Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-ray diffraction2.71996-12-23
344V49|1|AVTransfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
354V49|1|AWTransfer RNAtRNA-Phe, mRNAEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.72014-07-09
364V4T|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
374V4S|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
384V4R|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
394V4T|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.462014-07-09
404V4S|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.762014-07-09
411SZ1|1|ETransfer RNAT-RNA (76-MER)RF00005Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
421SZ1|1|FTransfer RNAT-RNA (76-MER)RF00005Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-ray diffraction6.212004-08-10
434V4R|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.92014-07-09
443WC2|1|QTransfer RNA76mer-tRNARF00005Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
453WC2|1|PTransfer RNA76mer-tRNARF00005Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-ray diffraction3.642013-12-18
461EVV|1|ATransfer RNAPHENYLALANINE TRANSFER RNASaccharomycesEukaryaRF00005CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-ray diffraction22000-05-01

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14V4T|1|AVTitle: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4676
24V4S|1|AVTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7676
34V4R|1|AVTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.976
44V49|1|AVTitle: Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
51ML5|1|BTitle: Structure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY1462
61MJ1|1|CTitle: FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
74V42|1|ACTitle: Crystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
81JGP|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
91JGQ|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
101JGO|1|CTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
114V66|1|APTitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
124V65|1|APTitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
134V66|1|AATitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
141SZ1|1|ETitle: Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
151SZ1|1|FTitle: Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
164V49|1|AWTitle: Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
174V42|1|ABTitle: Crystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
181JGO|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
191JGP|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
201JGQ|1|BTitle: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
211MJ1|1|DTitle: FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
221ZO3|1|BTitle: The P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
231ZO3|1|ATitle: The P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
241ZO1|1|FTitle: IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexELECTRON MICROSCOPY13.876
254V4V|1|AVTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
264V4V|1|AWTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
274V4V|1|AUTitle: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
284V4W|1|AUTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
294V4W|1|AVTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
304V4W|1|AWTitle: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
311EVV|1|ATitle: CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION262
324V4S|1|AWTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7673
334V4R|1|AWTitle: Crystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.973
344V4T|1|AWTitle: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4673
354V66|1|AETitle: Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY976
364V65|1|AETitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY976
373WC2|1|PTitle: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6474
383WC2|1|QTitle: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6473
393DEG|1|ATitle: Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.962
401QZA|1|BTitle: Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY1075
414V69|1|AYTitle: Ternary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
421TTT|1|FTitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
431TTT|1|ETitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
441TTT|1|DTitle: Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
451QZB|1|BTitle: Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY975
464V65|1|AATitle: Structure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0062 s