Equivalence class NR_20.0_69964.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2TMV|1|R (rep) | RNA (5'-R(P*GP*AP*A)-3') | VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | Fiber diffraction | 2.9 | 1989-01-09 | ||||
| 2 | 1RMV|1|B | RIBGRASS MOSAIC VIRUS RNA | Ribgrass mosaic virus | Viruses | RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION | Fiber diffraction | 2.9 | 1997-05-15 | ||
| 3 | 1CGM|1|I | RNA (5'-R(P*GP*AP*A)-3') | STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES | Fiber diffraction | 3.4 | 1994-04-30 | ||||
| 4 | 5A79|1|R | RNA | Tobacco mosaic virus | Viruses | Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM | Electron microscopy | 4.1 | 2015-09-02 | ||
| 5 | 1VTM|1|R | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mild green mosaic virus | Viruses | STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION | Fiber diffraction | 3.5 | 1994-07-31 | ||
| 6 | 4UDV|1|R | 5'-D(*GP*AP*AP)-3' | Tobacco mosaic virus | Viruses | Cryo-EM structure of TMV at 3.35 A resolution | Electron microscopy | 3.35 | 2014-12-31 | ||
| 7 | 2OM3|1|R | Tobacco Mosaic Virus RNA | High-resolution cryo-EM structure of Tobacco Mosaic Virus | Electron microscopy | 4.4 | 2007-10-16 | ||||
| 8 | 3PDM|1|R | RNA (5'-R(P*GP*AP*A)-3') | Hibiscus Latent Singapore virus | Fiber diffraction | 3.5 | 2011-01-12 | ||||
| 9 | 5A7A|1|R | RNA | Tobacco mosaic virus | Viruses | Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM | Electron microscopy | 4.1 | 2015-09-02 | ||
| 10 | 2XEA|1|R | 5'-(*GP*AP*AP)-3' | Tobacco mosaic virus | Viruses | 4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA | Electron microscopy | 4.6 | 2010-06-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_69964.1 | NR_all_13270.1 | 3.0 | (1) 3PDM|1|R | (9) 5A7A|1|R, 5A79|1|R, 4UDV|1|R, 2XEA|1|R, 2TMV|1|R, 2OM3|1|R, 1VTM|1|R, 1RMV|1|B, 1CGM|1|I | (0) |
| NR_20.0_69964.1 | NR_all_23083.1 | 3.0 | (3) 2XEA|1|R, 2TMV|1|R, 2OM3|1|R | (7) 5A7A|1|R, 5A79|1|R, 4UDV|1|R, 3PDM|1|R, 1VTM|1|R, 1RMV|1|B, 1CGM|1|I | (0) |
| NR_20.0_69964.1 | NR_all_33939.1 | 3.0 | (1) 1RMV|1|B | (9) 1CGM|1|I, 5A7A|1|R, 5A79|1|R, 4UDV|1|R, 3PDM|1|R, 2XEA|1|R, 2TMV|1|R, 2OM3|1|R, 1VTM|1|R | (0) |
| NR_20.0_69964.1 | NR_all_52623.1 | 3.0 | (1) 1CGM|1|I | (9) 5A7A|1|R, 5A79|1|R, 4UDV|1|R, 3PDM|1|R, 2XEA|1|R, 2TMV|1|R, 2OM3|1|R, 1VTM|1|R, 1RMV|1|B | (0) |
| NR_20.0_69964.1 | NR_all_97466.1 | 3.0 | (1) 1VTM|1|R | (9) 5A7A|1|R, 5A79|1|R, 4UDV|1|R, 3PDM|1|R, 2XEA|1|R, 2TMV|1|R, 2OM3|1|R, 1RMV|1|B, 1CGM|1|I | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4UDV|1|R | Title: Cryo-EM structure of TMV at 3.35 A resolution | ELECTRON MICROSCOPY | 3.35 | 3 | ||
| 2 | 2OM3|1|R | Title: High-resolution cryo-EM structure of Tobacco Mosaic Virus | ELECTRON MICROSCOPY | 4.4 | 3 | ||
| 3 | 2XEA|1|R | Title: 4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA | ELECTRON MICROSCOPY | 4.6 | 3 | ||
| 4 | 2TMV|1|R | Title: VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | FIBER DIFFRACTION | 2.9 | 3 | ||
| 5 | 5A79|1|R | Title: Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM | ELECTRON MICROSCOPY | 4.1 | 3 | ||
| 6 | 5A7A|1|R | Title: Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM | ELECTRON MICROSCOPY | 4.1 | 3 | ||
| 7 | 1CGM|1|I | Title: STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES | FIBER DIFFRACTION | 3.4 | 3 | ||
| 8 | 1RMV|1|B | Title: RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION | FIBER DIFFRACTION | 2.9 | 3 | ||
| 9 | 3PDM|1|R | Title: Hibiscus Latent Singapore virus | FIBER DIFFRACTION | 3.5 | 3 | ||
| 10 | 1VTM|1|R | Title: STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION | FIBER DIFFRACTION | 3.5 | 3 |
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