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Equivalence class NR_20.0_66310.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14KZY|1|i (rep)Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-ray diffraction7.012013-07-24
24KZZ|1|iSmall subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-ray diffraction7.032013-07-24
34KZX|1|iSmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with eIF1.X-ray diffraction7.812013-07-24
46D9J|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
55LZS|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
66MTD|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.32018-11-21
75LZV|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
86D90|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
96MTC|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.42018-11-21
106MTE|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.42018-11-21
115LZZ|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
125LZW|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
135LZT|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
146MTB|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.62018-11-21
155LZX|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
166HCJ|1|A2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.82018-10-17
175LZU|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
186HCF|1|A1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
193JAH|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
205FLX|1|1Small subunit ribosomal RNA18S RRNAOryctolagus cuniculusEukaryaRF01960Mammalian 40S HCV-IRES complexElectron microscopy3.92015-12-23
215LZY|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.992016-11-30
223JAG|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
233JAI|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
245K0Y|1|ASmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceElectron microscopy5.82016-07-13
256HCQ|1|A2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit collided di-ribosome (collided monosome)Electron microscopy6.52018-10-17
266HCM|1|A1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit collided di-ribosome (stalled monosome)Electron microscopy6.82018-10-17
274UJE|1|B1Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementElectron microscopy6.92014-07-16
283JAN|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
293JAJ|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
304UJD|1|C1Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateElectron microscopy8.92014-07-30
314D61|1|1Small subunit ribosomal RNA18S RRNAOryctolagus cuniculusEukaryaRF01960Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-03-04
324D5L|1|1Small subunit ribosomal RNA18S RRNA 2Oryctolagus cuniculusEukaryaRF01960Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-02-04
334UJC|1|C1Small subunit ribosomal RNA18S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF01960mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateElectron microscopy9.52014-07-30

Release history

Release9.179.18
Date2018-11-232018-11-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_66310.5NR_20.0_66310.49.17(29) 5LZU|1|9, 3JAH|1|9, 6HCF|1|A1, 4KZZ|1|i, 5LZT|1|9, 3JAG|1|9, 6D9J|1|2, 4KZY|1|i, 6D90|1|2, 4KZX|1|i, 5LZS|1|9, 5LZZ|1|9, 4D61|1|1, 5K0Y|1|A, 5LZY|1|9, 4D5L|1|1, 5FLX|1|1, 5LZX|1|9, 3JAN|1|S2, 6HCQ|1|A2, 4UJE|1|B1, 5LZW|1|9, 3JAJ|1|S2, 6HCM|1|A1, 4UJD|1|C1, 5LZV|1|9, 3JAI|1|9, 6HCJ|1|A2, 4UJC|1|C1(4) 6MTB|1|9, 6MTE|1|9, 6MTD|1|9, 6MTC|1|9(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14UJD|1|C1Title: mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.91742
24UJC|1|C1Title: mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.51742
34D61|1|1Title: Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
44D5L|1|1Title: Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
54UJE|1|B1Title: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.91742
65K0Y|1|ATitle: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceELECTRON MICROSCOPY5.81776
74KZX|1|iTitle: Rabbit 40S ribosomal subunit in complex with eIF1.X-RAY DIFFRACTION7.811797
84KZY|1|iTitle: Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-RAY DIFFRACTION7.011840
94KZZ|1|iTitle: Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.031797
103JAN|1|S2Title: Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
113JAJ|1|S2Title: Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
123JAH|1|9Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.451719
133JAG|1|9Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.651719
143JAI|1|9Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.651719
155LZS|1|9Title: Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.311697
165LZT|1|9Title: Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.651698
175LZV|1|9Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.351698
185LZU|1|9Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.751698
195LZW|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.531698
205LZX|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.671698
215LZZ|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.471698
225LZY|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.991698
236MTC|1|9Title: Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.41664
246MTB|1|9Title: Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.61664
256D90|1|2Title: Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.21697
266HCM|1|A1Title: Structure of the rabbit collided di-ribosome (stalled monosome)ELECTRON MICROSCOPY6.81732
276HCF|1|A1Title: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.91732
286HCQ|1|A2Title: Structure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.51740
296HCJ|1|A2Title: Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.81740
306MTE|1|9Title: Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.41664
316MTD|1|9Title: Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.31692
326D9J|1|2Title: Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.21697
335FLX|1|1Title: Mammalian 40S HCV-IRES complexELECTRON MICROSCOPY3.91708

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