Equivalence class NR_20.0_65483.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|Y (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-ray diffraction | 3.43 | 2015-10-21 |
| 2 | 4WFA|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-ray diffraction | 3.39 | 2015-10-21 |
| 3 | 4WCE|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-ray diffraction | 3.53 | 2015-10-21 |
| 4 | 4WFB|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-ray diffraction | 3.43 | 2015-10-21 |
| 5 | 5NRG|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-ray diffraction | 3.44 | 2017-08-09 |
| 6 | 5HKV|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-ray diffraction | 3.66 | 2017-05-03 |
| 7 | 5HL7|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-ray diffraction | 3.55 | 2016-12-21 |
| 8 | 5NGM|1|AB | 5S ribosomal RNA | 5S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
| 9 | 5T7V|1|C | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2017-05-31 |
| 10 | 5ND8|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 11 | 5ND9|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 12 | 5LI0|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2016-12-28 |
| 13 | 5TCU|1|C | 5S ribosomal RNA | 5S rRNA CHAIN | Staphylococcus aureus | Bacteria | RF00001 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2017-05-24 |
| 14 | 6FXC|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 15 | 5NG8|1|BB | 5S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 | ||||
| 16 | 6FXC|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 17 | 5NG8|1|AB | 5S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_65483.2 | NR_20.0_65483.3 | 9.16 | (15) 4WF9|1|Y, 4WFB|1|Y, 5HL7|1|Y, 5ND8|1|B, 5NGM|1|AB, 5T7V|1|C, 6FXC|1|AB, 4WCE|1|Y, 4WFA|1|Y, 5HKV|1|Y, 5LI0|1|B, 5ND9|1|B, 5NRG|1|Y, 5TCU|1|C, 6FXC|1|BB | (2) 5NG8|1|BB, 5NG8|1|AB | (1) 6HMA|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 6FXC|1|BB | Title: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | ||
| 2 | 5NGM|1|AB | Title: 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 115 | ||
| 3 | 6FXC|1|AB | Title: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | ||
| 4 | 5HL7|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 114 | ||
| 5 | 5HKV|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 114 | ||
| 6 | 5NRG|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 114 | ||
| 7 | 4WCE|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 114 | ||
| 8 | 4WFA|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 114 | ||
| 9 | 4WF9|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 114 | ||
| 10 | 4WFB|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 114 | ||
| 11 | 5LI0|1|B | Title: 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 114 | ||
| 12 | 5ND8|1|B | Title: Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 114 | ||
| 13 | 5ND9|1|B | Title: Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 114 | ||
| 14 | 5NG8|1|BB | Title: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | ||
| 15 | 5T7V|1|C | Title: Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 114 | ||
| 16 | 5NG8|1|AB | Title: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | ||
| 17 | 5TCU|1|C | Title: Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 114 |
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