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Equivalence class NR_20.0_59140.4 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16BK8|1|5 (rep)U5 spliceosomal RNAU5 snRNA, RNA (34-MER)Saccharomyces cerevisiaeEukaryaRF00020S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
25GMK|1|DU5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
35GM6|1|DU5 spliceosomal RNASaccharomyces cerevisiae strain CDRDR_sf_H chromosome VII sequence, Pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionElectron microscopy3.52016-09-21
45Y88|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
56EXN|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: UBC4 mRNASaccharomyces cerevisiaeEukaryaRF00020Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
65YLZ|1|BU5 spliceosomal RNAU5 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
75LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
85ZWM|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)Electron microscopy3.42018-08-29
95GAN|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromElectron microscopy3.72016-01-27
105MPS|1|5U5 spliceosomal RNAU5 snRNA, UBC4 gene exonSaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
115WSG|1|DU5 spliceosomal RNAU5 snRNA, 5'-exonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
125MQ0|1|5U5 spliceosomal RNASaccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence, 5'-EXON OF UBC4 PRE-MRNASaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy4.172017-01-18
135GAM|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.72016-02-03
145GAP|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Body region of the U4/U6.U5 tri-snRNPElectron microscopy3.62016-01-27
155ZWO|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromElectron microscopy3.92018-08-29
163JCM|1|FU5 spliceosomal RNASNR7-L snRNA, SNR6 snRNA, pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.82016-02-24
175LQW|1|5U5 spliceosomal RNAU5 snRNA, actin pre-mRNASaccharomyces cerevisiaeEukaryaRF00020yeast activated spliceosomeElectron microscopy5.82016-10-05
185NRL|1|5U5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Structure of a pre-catalytic spliceosomeElectron microscopy7.22017-05-31
195LJ5|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Overall structure of the yeast spliceosome immediately after branching.Electron microscopy102016-08-31

Release history

Release9.159.169.179.189.199.209.219.229.239.24
Date2018-11-092018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_59140.4NR_20.0_59140.39.15(15) 5GAP|1|U, 5NRL|1|5, 5GAN|1|U, 5MQ0|1|5, 5GAM|1|U, 5MPS|1|5, 3JCM|1|F, 5LQW|1|5, 5LJ5|1|U, 5LJ3|1|U, 6EXN|1|5, 5GMK|1|D, 6BK8|1|5, 5GM6|1|D, 5WSG|1|D(4) 5Y88|1|B, 5ZWO|1|B, 5ZWM|1|B, 5YLZ|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
16EXN|1|5Title: Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7171
26BK8|1|5Title: S. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3103
35YLZ|1|BTitle: Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6117
45WSG|1|DTitle: Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4117
55GMK|1|DTitle: Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
65Y88|1|BTitle: Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46117
75GM6|1|DTitle: Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionELECTRON MICROSCOPY3.5117
85MQ0|1|5Title: Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.17141
95MPS|1|5Title: Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.85141
105LJ5|1|UTitle: Overall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10141
115LJ3|1|UTitle: Structure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
125LQW|1|5Title: yeast activated spliceosomeELECTRON MICROSCOPY5.8141
135GAM|1|UTitle: Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.7141
145GAN|1|UTitle: The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromELECTRON MICROSCOPY3.7141
155GAP|1|UTitle: Body region of the U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.620
165NRL|1|5Title: Structure of a pre-catalytic spliceosomeELECTRON MICROSCOPY7.2170
175ZWO|1|BTitle: Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromELECTRON MICROSCOPY3.9175
185ZWM|1|BTitle: Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)ELECTRON MICROSCOPY3.4175
193JCM|1|FTitle: Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.8113

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