Equivalence class NR_20.0_07428.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5AXM|1|P (rep) | Transfer RNA | RNA (75-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) | X-ray diffraction | 2.21 | 2016-08-03 |
| 2 | 5AXN|1|P | Transfer RNA | RNA (75-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP | X-ray diffraction | 2.7 | 2016-08-03 |
| 3 | 1OB2|1|B | Transfer RNA | TRANSFER-RNA, PHE | Saccharomyces cerevisiae | Eukarya | RF00005 | E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA | X-ray diffraction | 3.35 | 2004-05-27 |
| 4 | 4TNA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE | X-ray diffraction | 2.5 | 1978-04-12 |
| 5 | 1EHZ|1|A | Transfer RNA | TRANSFER RNA (PHE) | Saccharomyces cerevisiae | Eukarya | RF00005 | The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution | X-ray diffraction | 1.93 | 2000-10-02 |
| 6 | 1I9V|1|A | Transfer RNA | PHENYLALANINE TRANSFER RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX | X-ray diffraction | 2.6 | 2001-06-04 |
| 7 | 1TN1|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA | X-ray diffraction | 3 | 1987-01-15 |
| 8 | 1TN2|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA | X-ray diffraction | 3 | 1986-10-24 |
| 9 | 5M1J|1|A3 | Transfer RNA | yeast Phe-tRNA-Phe, nonstop mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 2017-01-18 |
| 10 | 4TRA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-ray diffraction | 3 | 1987-11-06 |
| 11 | 6TNA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT | X-ray diffraction | 2.7 | 1979-01-16 |
| 12 | 1TRA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES | X-ray diffraction | 3 | 1986-07-14 |
| 13 | 1LS2|1|B | Transfer RNA | Phenylalanine transfer RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome | Electron microscopy | 16.8 | 2002-06-26 |
| 14 | 1FCW|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 2000-08-11 |
| 15 | 1FCW|1|D | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 2000-08-11 |
| 16 | 1FCW|1|B | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 2000-08-11 |
| 17 | 1FCW|1|E | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 2000-08-11 |
| 18 | 1FCW|1|C | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 2000-08-11 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_07428.1 | NR_20.0_72538.1 | 8.0 | (9) 4TRA|1|A, 1I9V|1|A, 1EHZ|1|A, 1TN2|1|A, 1TN1|1|A, 4TNA|1|A, 1TRA|1|A, 6TNA|1|A, 1OB2|1|B | (9) 5AXM|1|P, 1LS2|1|B, 1FCW|1|D, 1FCW|1|C, 1FCW|1|A, 5AXN|1|P, 1FCW|1|B, 1FCW|1|E, 5M1J|1|A3 | (6) 1TTT|1|E, 3WC2|1|P, 1EVV|1|A, 1TTT|1|D, 3WC2|1|Q, 1TTT|1|F |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_07428.1 | NR_20.0_07428.2 | 9.15 | (18) 1TN2|1|A, 5AXN|1|P, 1FCW|1|D, 1TN1|1|A, 5AXM|1|P, 1FCW|1|C, 1OB2|1|B, 4TRA|1|A, 1FCW|1|B, 1LS2|1|B, 4TNA|1|A, 6TNA|1|A, 1FCW|1|A, 1I9V|1|A, 1TRA|1|A, 5M1J|1|A3, 1EHZ|1|A, 1FCW|1|E | (0) | (3) 6GQ1|1|AX, 6GQB|1|AX, 6GQV|1|AY |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5M1J|1|A3 | Title: Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 62 | ||
| 2 | 1FCW|1|D | Title: TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 62 | ||
| 3 | 1FCW|1|B | Title: TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 62 | ||
| 4 | 1FCW|1|A | Title: TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 62 | ||
| 5 | 1FCW|1|C | Title: TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 62 | ||
| 6 | 1FCW|1|E | Title: TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 62 | ||
| 7 | 4TRA|1|A | Title: RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-RAY DIFFRACTION | 3 | 62 | ||
| 8 | 6TNA|1|A | Title: CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT | X-RAY DIFFRACTION | 2.7 | 62 | ||
| 9 | 1EHZ|1|A | Title: The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution | X-RAY DIFFRACTION | 1.93 | 62 | ||
| 10 | 1TN2|1|A | Title: CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA | X-RAY DIFFRACTION | 3 | 62 | ||
| 11 | 1TN1|1|A | Title: CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA | X-RAY DIFFRACTION | 3 | 62 | ||
| 12 | 4TNA|1|A | Title: FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE | X-RAY DIFFRACTION | 2.5 | 62 | ||
| 13 | 1TRA|1|A | Title: RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES | X-RAY DIFFRACTION | 3 | 62 | ||
| 14 | 1I9V|1|A | Title: CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX | X-RAY DIFFRACTION | 2.6 | 74 | ||
| 15 | 1LS2|1|B | Title: Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome | ELECTRON MICROSCOPY | 16.8 | 76 | ||
| 16 | 5AXM|1|P | Title: Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) | X-RAY DIFFRACTION | 2.21 | 72 | ||
| 17 | 1OB2|1|B | Title: E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA | X-RAY DIFFRACTION | 3.35 | 63 | ||
| 18 | 5AXN|1|P | Title: Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP | X-RAY DIFFRACTION | 2.7 | 65 |
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