Equivalence class NR_2.5_80669.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4Y4O|1|2A (rep) | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-ray diffraction | 2.3 | 2015-03-18 |
| 2 | 4Y4O|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-ray diffraction | 2.3 | 2015-03-18 |
| 3 | 4W2F|1|DA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 4 | 4W2F|1|BA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 5 | 4Y4P|1|1A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 6 | 4Y4P|1|2A | Large subunit ribosomal RNA | 23S Ribosomal RNA | Thermus thermophilus | Bacteria | RF02541 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4Y4P|1|1A | Title: Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 2860 | ||
| 2 | 4W2F|1|BA | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 2871 | ||
| 3 | 4W2F|1|DA | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 2800 | ||
| 4 | 4Y4P|1|2A | Title: Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 2789 | ||
| 5 | 4Y4O|1|2A | Title: Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 2856 | ||
| 6 | 4Y4O|1|1A | Title: Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 2861 |
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