NR_2.5_52487.2

Members (13)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	1S72\|1\|0 (rep)	Large subunit ribosomal RNA	23S ribosomal RNA	Haloarcula marismortui	Archaea	RF02540	REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION	X-ray diffraction	2.4	2004-06-15
2	1JJ2\|1\|0	Large subunit ribosomal RNA	23S RRNA	Haloarcula marismortui	Archaea	RF02540	Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution	X-ray diffraction	2.4	2001-08-01
3	4V9F\|1\|0	Large subunit ribosomal RNA	23S Ribosomal RNA	Haloarcula marismortui	Archaea	RF02540	The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins	X-ray diffraction	2.4	2014-07-09
4	1YHQ\|1\|0	Large subunit ribosomal RNA	23S Ribosomal RNA	Haloarcula marismortui	Archaea	RF02540	Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui	X-ray diffraction	2.4	2005-04-26
5	3CC2\|1\|0	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Haloarcula marismortui	Archaea	RF02540	The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins	X-ray diffraction	2.4	2008-05-20
6	1VQO\|1\|0	Large subunit ribosomal RNA	23S ribosomal rna	Haloarcula marismortui	Archaea	RF02540	The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui	X-ray diffraction	2.2	2005-11-29
7	1VQ8\|1\|0	Large subunit ribosomal RNA	23S ribosomal rna, 5'-R(CPCP(DA)(PHE)*(ACA))-3'	Haloarcula marismortui	Archaea	RF02540	The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui	X-ray diffraction	2.2	2005-11-29
8	1VQP\|1\|0	Large subunit ribosomal RNA	23S ribosomal rna, 5'-R((DC)P(DC)P(PPU)(LOF)P(PO2)PAPCC)-3'	Haloarcula marismortui	Archaea	RF02540	The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui	X-ray diffraction	2.25	2005-11-29
9	1VQK\|1\|0	Large subunit ribosomal RNA	23S ribosomal rna	Haloarcula marismortui	Archaea	RF02540	The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui	X-ray diffraction	2.3	2005-11-29
10	1VQN\|1\|0	Large subunit ribosomal RNA	23S ribosomal rna, 5'-R(CPCPAP(PHE)(ACA)(BTN))-3'	Haloarcula marismortui	Archaea	RF02540	The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui	X-ray diffraction	2.4	2005-11-29
11	1VQ9\|1\|0	Large subunit ribosomal RNA	23S ribosomal rna, 5'-R(CPCPAP(PHE)*(ACA))-3'	Haloarcula marismortui	Archaea	RF02540	The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui	X-ray diffraction	2.4	2005-11-29
12	1VQ7\|1\|0	Large subunit ribosomal RNA	23S ribosomal rna, 5'-R(CPCP(5AA)P(2OP)P(PAE)PAPCC)-3')	Haloarcula marismortui	Archaea	RF02540	The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui	X-ray diffraction	2.5	2005-11-29
13	1FFK\|1\|0	Large subunit ribosomal RNA	23S RRNA	Haloarcula marismortui	Archaea	RF02540	CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION	X-ray diffraction	2.4	2000-08-14

Release history

Release	9.16	9.17	9.18	9.19	9.20	9.21	9.22	9.23	9.24
Date	2018-11-16	2018-11-23	2018-11-30	2018-12-05	2018-12-12	2018-12-19	2018-12-26	2019-01-02	2019-01-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_52487.2	NR_2.5_52487.1	9.16	(13) 1VQK\|1\|0, 1VQ7\|1\|0, 1JJ2\|1\|0, 4V9F\|1\|0, 1VQP\|1\|0, 1VQN\|1\|0, 1VQ8\|1\|0, 1S72\|1\|0, 1YHQ\|1\|0, 1VQO\|1\|0, 1VQ9\|1\|0, 1FFK\|1\|0, 3CC2\|1\|0	(0)	(2) 1VQL\|1\|0, 1VQM\|1\|0

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	1VQO\|1\|0	Title: The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui	X-RAY DIFFRACTION	2.2	2749
2	1VQK\|1\|0	Title: The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui	X-RAY DIFFRACTION	2.3	2749
3	1VQ8\|1\|0	Title: The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui	X-RAY DIFFRACTION	2.2	2749
4	1VQ9\|1\|0	Title: The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui	X-RAY DIFFRACTION	2.4	2749
5	1VQN\|1\|0	Title: The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui	X-RAY DIFFRACTION	2.4	2749
6	1VQP\|1\|0	Title: The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui	X-RAY DIFFRACTION	2.25	2749
7	1YHQ\|1\|0	Title: Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui	X-RAY DIFFRACTION	2.4	2749
8	3CC2\|1\|0	Title: The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins	X-RAY DIFFRACTION	2.4	2749
9	1S72\|1\|0	Title: REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION	X-RAY DIFFRACTION	2.4	2749
10	1JJ2\|1\|0	Title: Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution	X-RAY DIFFRACTION	2.4	2754
11	1VQ7\|1\|0	Title: The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui	X-RAY DIFFRACTION	2.5	2749
12	1FFK\|1\|0	Title: CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION	X-RAY DIFFRACTION	2.4	2706
13	4V9F\|1\|0	Title: The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins	X-RAY DIFFRACTION	2.4	2803

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_52487.2 Current

Release history

Parents

Children