Equivalence class NR_2.0_79457.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4Z4D|1|B+ 4Z4D|1|D (rep) | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*G)-3') | synthetic construct | Synthetic | Human Argonaute2 Bound to t1-G Target RNA | X-ray diffraction | 1.6 | 2015-09-23 | ||
| 2 | 4W5O|1|B+ 4W5O|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | Synthetic | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-ray diffraction | 1.8 | 2014-11-12 | ||
| 3 | 4Z4E|1|B+ 4Z4E|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*U)-3') | synthetic construct | Synthetic | Human Argonaute2 Bound to t1-U Target RNA | X-ray diffraction | 1.8 | 2015-09-23 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.0_79457.3 | NR_all_79457.2 | 5.0 | (3) 4Z4E|1|B+4Z4E|1|D, 4Z4D|1|B+4Z4D|1|D, 4W5O|1|B+4W5O|1|D | (0) | (9) 4W5R|1|B+4W5R|1|D, 4Z4G|1|B+4Z4G|1|D, 4W5Q|1|B+4W5Q|1|D, 4Z4F|1|B+4Z4F|1|D, 4W5N|1|B, 4Z4C|1|B+4Z4C|1|D, 4Z4I|1|B+4Z4I|1|D, 4W5T|1|B+4W5T|1|D, 4Z4H|1|B+4Z4H|1|D |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.0_79457.3 | NR_2.0_38593.1 | 6.0 | (1) 4Z4D|1|B+4Z4D|1|D | (2) 4W5O|1|B+4W5O|1|D, 4Z4E|1|B+4Z4E|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4Z4D|1|B+4Z4D|1|D | Title: Human Argonaute2 Bound to t1-G Target RNA | X-RAY DIFFRACTION | 1.6 | 20 | ||
| 2 | 4W5O|1|B+4W5O|1|D | Title: The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-RAY DIFFRACTION | 1.8 | 20 | ||
| 3 | 4Z4E|1|B+4Z4E|1|D | Title: Human Argonaute2 Bound to t1-U Target RNA | X-RAY DIFFRACTION | 1.8 | 19 |
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