Equivalence class NR_2.0_41479.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1XPE|1|A+ 1XPE|1|B (rep) | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' | HIV-1 subtype B genomic RNA Dimerization Initiation Site | X-ray diffraction | 1.94 | 2005-10-18 | ||||
| 2 | 2FD0|1|A+ 2FD0|1|B | HIV-1 DIS RNA | HIV-1 DIS kissing-loop in complex with lividomycin | X-ray diffraction | 1.8 | 2006-05-16 | ||||
| 3 | 1ZCI|1|A+ 1ZCI|1|B | 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS RNA subtype F- monoclinic form | X-ray diffraction | 1.65 | 2006-01-31 | ||||
| 4 | 2FCX|1|A+ 2FCX|1|B | HIV-1 DIS RNA | HIV-1 DIS kissing-loop in complex with neamine | X-ray diffraction | 2 | 2006-05-16 | ||||
| 5 | 1ZCI|1|C+ 1ZCI|1|D | 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' | HIV-1 DIS RNA subtype F- monoclinic form | X-ray diffraction | 1.65 | 2006-01-31 | ||||
| 6 | 1NLC|1|B | HIV-1 DIS(MAL) genomic RNA | HIV-1 DIS(Mal) duplex Zn-soaked | X-ray diffraction | 1.85 | 2003-05-13 | ||||
| 7 | 3C44|1|A | HIV-1 subtype F genomic RNA | Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycin | X-ray diffraction | 2 | 2008-05-06 | ||||
| 8 | 2OIY|1|A | 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' | Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation site | X-ray diffraction | 1.6 | 2007-12-25 | ||||
| 9 | 2QEK|1|A | HIV-1 subtype F DIS genomic RNA | HIV-1 subtype F DIS RNA extended duplex form | X-ray diffraction | 1.8 | 2008-05-06 | ||||
| 10 | 1NLC|1|A | HIV-1 DIS(MAL) genomic RNA | HIV-1 DIS(Mal) duplex Zn-soaked | X-ray diffraction | 1.85 | 2003-05-13 | ||||
| 11 | 3DVV|1|A | HIV-1 genomic RNA | Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe) | X-ray diffraction | 2 | 2008-08-12 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2FD0|1|A+2FD0|1|B | Title: HIV-1 DIS kissing-loop in complex with lividomycin | X-RAY DIFFRACTION | 1.8 | 22 | ||
| 2 | 2FCX|1|A+2FCX|1|B | Title: HIV-1 DIS kissing-loop in complex with neamine | X-RAY DIFFRACTION | 2 | 22 | ||
| 3 | 1XPE|1|A+1XPE|1|B | Title: HIV-1 subtype B genomic RNA Dimerization Initiation Site | X-RAY DIFFRACTION | 1.94 | 23 | ||
| 4 | 1ZCI|1|C+1ZCI|1|D | Title: HIV-1 DIS RNA subtype F- monoclinic form | X-RAY DIFFRACTION | 1.65 | 22 | ||
| 5 | 1ZCI|1|A+1ZCI|1|B | Title: HIV-1 DIS RNA subtype F- monoclinic form | X-RAY DIFFRACTION | 1.65 | 22 | ||
| 6 | 3DVV|1|A | Title: Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe) | X-RAY DIFFRACTION | 2 | 22 | ||
| 7 | 3C44|1|A | Title: Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycin | X-RAY DIFFRACTION | 2 | 23 | ||
| 8 | 2OIY|1|A | Title: Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation site | X-RAY DIFFRACTION | 1.6 | 23 | ||
| 9 | 1NLC|1|B | Title: HIV-1 DIS(Mal) duplex Zn-soaked | X-RAY DIFFRACTION | 1.85 | 26 | ||
| 10 | 1NLC|1|A | Title: HIV-1 DIS(Mal) duplex Zn-soaked | X-RAY DIFFRACTION | 1.85 | 23 | ||
| 11 | 2QEK|1|A | Title: HIV-1 subtype F DIS RNA extended duplex form | X-RAY DIFFRACTION | 1.8 | 23 |
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