Equivalence class DNA_all_45969.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1MNN|1|B+ 1MNN|1|C (rep) | 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*TP*GP*TP*CP*GP*C)-3' | Structure of the sporulation specific transcription factor Ndt80 bound to DNA | X-ray diffraction | 1.4 | 2002-11-20 | ||||
| 2 | 2VBL|1|C+ 2VBL|1|E+ 2VBL|1|S+ 2VBL|1|T | 5'-D(*DT*DC*DT*DG*DC*DC*DT*DT*DT*DT*DT*DT *DGP*DAP)-3', 5'-D(*DT*DT*DA*DG*DG*DA*DT*DC*DC*DT*DT*DC *DAP*DAP)-3', 5'-D(*DA*DA*DA*DA*DG*DG*DC*DA*DG*DAP)-3', 5'-D(*DA*DG*DG*DA*DT*DC*DC*DT*DA*DAP)-3' | Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers | X-ray diffraction | 1.8 | 2008-10-28 | ||||
| 3 | 2EVG|1|B+ 2EVG|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*TP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*AP*TP*GP*TP*GP*TP*CP*GP*C)-3' | Structure of a Ndt80-DNA complex (MSE mutant mA7T) | X-ray diffraction | 1.55 | 2006-03-21 | ||||
| 4 | 2EVF|1|B+ 2EVF|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*TP*AP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*TP*AP*GP*TP*GP*TP*CP*GP*C)-3' | Structure of a Ndt80-DNA complex (MSE mutant mA6T) | X-ray diffraction | 1.56 | 2006-03-21 | ||||
| 5 | 2EUZ|1|B+ 2EUZ|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*AP*TP*AP*AP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*TP*TP*AP*TP*GP*TP*CP*GP*C)-3' | Structure of a Ndt80-DNA complex (MSE mutant mC5T) | X-ray diffraction | 1.56 | 2006-03-21 | ||||
| 6 | 2ETW|1|B+ 2ETW|1|C | 5'-D(*TP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*TP*GP*TP*GP*GP*C)-3' | Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes | X-ray diffraction | 1.67 | 2006-03-21 | ||||
| 7 | 2EUX|1|B+ 2EUX|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*GP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*CP*GP*TP*CP*GP*C)-3' | Structure of a Ndt80-DNA complex (MSE VARIANT vA4G) | X-ray diffraction | 1.57 | 2006-03-21 | ||||
| 8 | 2EUW|1|B+ 2EUW|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*AP*GP*TP*CP*GP*C)-3' | Structure of a Ndt80-DNA complex (MSE mutant mA4T) | X-ray diffraction | 1.68 | 2006-03-21 | ||||
| 9 | 2HHS|1|C+ 2HHS|1|B | 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*GP*CP*AP*TP*GP*A)-3', 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3' | O6-methyl:C pair in the polymerase-10 basepair position | X-ray diffraction | 1.8 | 2006-12-12 | ||||
| 10 | 2EVJ|1|B+ 2EVJ|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*AP*AP*CP*AP*C)-3', 5'-D(*AP*GP*TP*GP*TP*TP*TP*GP*TP*GP*TP*CP*GP*C)-3' | Structure of an Ndt80-DNA complex (MSE mutant mA9C) | X-ray diffraction | 1.89 | 2006-03-21 | ||||
| 11 | 2VBN|1|C+ 2VBN|1|E+ 2VBN|1|S+ 2VBN|1|T | 5'-D(*TP*TP*AP*GP*GP*AP*TP*CP*CP*TP *TP*CP*AP*AP)-3', 5'-D(*TP*CP*TP*GP*CP*CP*TP*TP*TP*TP *TP*TP*GP*AP)-3', 5'-D(*AP*AP*AP*AP*GP*GP*CP*AP*GP*AP)-3', 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*AP*AP)-3' | Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers | X-ray diffraction | 1.9 | 2008-10-28 | ||||
| 12 | 2EVI|1|B+ 2EVI|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*AP*TP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*AP*TP*TP*GP*TP*GP*TP*CP*GP*C)-3' | Structure of a Ndt80-DNA complex (MSE mutant mA8T) | X-ray diffraction | 1.8 | 2006-03-21 | ||||
| 13 | 2EVH|1|B+ 2EVH|1|C | 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*GP*AP*AP*AP*C)-3', 5'-D(*AP*GP*TP*TP*TP*CP*TP*GP*TP*GP*TP*CP*GP*C)-3' | Structure of a Ndt80-DNA complex (MSE mutant mA7G) | X-ray diffraction | 1.989 | 2006-03-21 | ||||
| 14 | 1UA0|1|C+ 1UA0|1|B | DNA template strand with aminofluorene adduct, DNA primer strand | Aminofluorene DNA adduct at the pre-insertion site of a DNA polymerase | X-ray diffraction | 2.1 | 2004-09-28 | ||||
| 15 | 2EUV|1|B+ 2EUV|1|C | 5'-D(*TP*GP*CP*AP*AP*CP*AP*CP*AP*AP*AP*TP*AP*C)-3', 5'-D(*AP*GP*TP*AP*TP*TP*TP*GP*TP*GP*TP*TP*GP*C)-3' | Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes | X-ray diffraction | 1.94 | 2006-03-21 | ||||
| 16 | 3MXA|1|C+ 3MXA|1|E+ 3MXA|1|D+ 3MXA|1|F | DNA (5'-D(*TP*TP*GP*TP*TP*CP*TP*CP*AP*GP*GP*TP*AP*C)-3'), DNA (5'-D(P*CP*TP*CP*AP*GP*CP*CP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*GP*AP*GP*GP*TP*AP*C)-3'), DNA (5'-D(P*CP*TP*GP*AP*GP*AP*AP*CP*AP*A)-3') | Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus | X-ray diffraction | 2.3 | 2010-10-06 | ||||
| 17 | 1N3F|1|C+ 1N3F|1|E+ 1N3F|1|D+ 1N3F|1|F | 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*GP*A)-3', 5'-D(P*GP*AP*CP*AP*GP*TP*TP*TP*CP*G-3') | Crystal structure of I-CreI bound to a palindromic DNA sequence II (palindrome of right side of wildtype DNA target sequence) | X-ray diffraction | 2 | 2003-06-03 | ||||
| 18 | 1UA1|1|C+ 1UA1|1|B | DNA template strand with aminofluorene adduct, DNA primer strand | Structure of aminofluorene adduct paired opposite cytosine at the polymerase active site. | X-ray diffraction | 2 | 2004-09-28 | ||||
| 19 | 1N3F|1|I+ 1N3F|1|K+ 1N3F|1|J+ 1N3F|1|L | 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*GP*A)-3', 5'-D(P*GP*AP*CP*AP*GP*TP*TP*TP*CP*G-3') | Crystal structure of I-CreI bound to a palindromic DNA sequence II (palindrome of right side of wildtype DNA target sequence) | X-ray diffraction | 2 | 2003-06-03 | ||||
| 20 | 3CMY|1|B+ 3CMY|1|C | 5'-D(*DAP*DCP*DAP*DTP*DAP*DAP*DP*DCP*DGP*DAP*DTP*DTP*DAP*DC)-3', 5'-D(*DTP*DGP*DTP*DAP*DAP*DTP*DCP*DGP*DAP*DTP*DTP*DAP*DTP*DG)-3' | Structure of a homeodomain in complex with DNA | X-ray diffraction | 1.95 | 2009-02-17 | ||||
| 21 | 1LV5|1|D+ 1LV5|1|C | 5'-D(*AP*CP*GP*TP*CP*GP*CP*TP*GP*AP*TP*CP*CP*G)-3', 5'-D(*GP*GP*AP*TP*CP*AP*GP*CP*GP*A)-3' | Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP | X-ray diffraction | 1.95 | 2003-03-25 | ||||
| 22 | 1LV5|1|F+ 1LV5|1|E | 5'-D(*AP*CP*GP*TP*CP*GP*CP*TP*GP*AP*TP*CP*CP*G)-3', 5'-D(*GP*GP*AP*TP*CP*AP*GP*CP*GP*A)-3' | Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP | X-ray diffraction | 1.95 | 2003-03-25 | ||||
| 23 | 3AAF|1|C+ 3AAF|1|D | DNA (5'-D(*AP*CP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*GP*T)-3') | Structure of WRN RQC domain bound to double-stranded DNA | X-ray diffraction | 1.9 | 2010-02-16 | ||||
| 24 | 2YVH|1|E+ 2YVH|1|F | 5'-D(*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DAP*DCP*DCP*DGP*DAP*DCP*DC)-3', 5'-D(*DGP*DGP*DTP*DCP*DGP*DGP*DTP*DAP*DCP*DAP*DGP*DTP*DTP*DA)-3' | Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR | X-ray diffraction | 2.5 | 2008-04-15 | ||||
| 25 | 2YVH|1|G+ 2YVH|1|H | 5'-D(*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DAP*DCP*DCP*DGP*DAP*DCP*DC)-3', 5'-D(*DGP*DGP*DTP*DCP*DGP*DGP*DTP*DAP*DCP*DAP*DGP*DTP*DTP*DA)-3' | Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR | X-ray diffraction | 2.5 | 2008-04-15 | ||||
| 26 | 2D5V|1|C+ 2D5V|1|D | 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3' | Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter | X-ray diffraction | 2 | 2006-12-05 | ||||
| 27 | 2D5V|1|E+ 2D5V|1|F | 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3' | Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter | X-ray diffraction | 2 | 2006-12-05 | ||||
| 28 | 3LNQ|1|B+ 3LNQ|1|C | 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3', 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3' | Structure of Aristaless homeodomain in complex with DNA | X-ray diffraction | 2.25 | 2010-04-28 | ||||
| 29 | 1N3E|1|C+ 1N3E|1|E+ 1N3E|1|D+ 1N3E|1|F | 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*C)-3', 5'-D(P*GP*AP*CP*GP*TP*TP*TP*TP*CP*G)-3' | Crystal structure of I-CreI bound to a palindromic DNA sequence I (palindrome of left side of wildtype DNA target sequence) | X-ray diffraction | 2.5 | 2003-06-03 | ||||
| 30 | 1N3E|1|I+ 1N3E|1|K+ 1N3E|1|J+ 1N3E|1|L | 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*C)-3', 5'-D(P*GP*AP*CP*GP*TP*TP*TP*TP*CP*G)-3' | Crystal structure of I-CreI bound to a palindromic DNA sequence I (palindrome of left side of wildtype DNA target sequence) | X-ray diffraction | 2.5 | 2003-06-03 | ||||
| 31 | 2H7F|1|Z+ 2H7F|1|Y | 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3' | Structure of variola topoisomerase covalently bound to DNA | X-ray diffraction | 2.7 | 2006-08-15 | ||||
| 32 | 2PYJ|1|K+ 2PYJ|1|J | 5'-d(ACACGTAAGCAGTC)-3', 5'-d(GACTGCTTA(DOC)-3' | Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) | X-ray diffraction | 2.03 | 2007-07-17 | ||||
| 33 | 2PYJ|1|R+ 2PYJ|1|Q | 5'-d(ACACGTAAGCAGTC)-3', 5'-d(GACTGCTTA(DOC)-3' | Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) | X-ray diffraction | 2.03 | 2007-07-17 | ||||
| 34 | 2PYJ|1|Y+ 2PYJ|1|X | 5'-d(ACACGTAAGCAGTC)-3', 5'-d(GACTGCTTA(DOC)-3' | Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) | X-ray diffraction | 2.03 | 2007-07-17 | ||||
| 35 | 2H7G|1|Z+ 2H7G|1|Y | 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*TP*A)-3' | Structure of variola topoisomerase non-covalently bound to DNA | X-ray diffraction | 1.9 | 2006-08-15 | ||||
| 36 | 3KD1|1|P | DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(4DG))-3') | Closed binary complex of an RB69 gp43 fingers domain mutant complexed with an acyclic GMP terminated primer template pair. | X-ray diffraction | 2.66 | 2011-04-13 | ||||
| 37 | 1ZET|1|T+ 1ZET|1|P | 5'-D(P*AP*GP*GP*GP*(BRU)P*CP*CP*(BRU)P*(BRU)P*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*CP*(DOC))-3' | X-ray data do not support hoogsteen base-pairing during replication by human polymerase iota | X-ray diffraction | 2.3 | 2005-07-19 | ||||
| 38 | 3D1N|1|A+ 3D1N|1|B | 5'-D(*DAP*DGP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DA)-3', 5'-D(*DTP*DTP*DAP*DTP*DTP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DCP*DT)-3' | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-ray diffraction | 2.51 | 2009-05-26 | ||||
| 39 | 3D1N|1|C+ 3D1N|1|D | 5'-D(*DAP*DGP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DA)-3', 5'-D(*DTP*DTP*DAP*DTP*DTP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DCP*DT)-3' | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-ray diffraction | 2.51 | 2009-05-26 | ||||
| 40 | 3D1N|1|E+ 3D1N|1|F | 5'-D(*DAP*DGP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DA)-3', 5'-D(*DTP*DTP*DAP*DTP*DTP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DCP*DT)-3' | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-ray diffraction | 2.51 | 2009-05-26 | ||||
| 41 | 3D1N|1|G+ 3D1N|1|H | 5'-D(*DAP*DGP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DA)-3', 5'-D(*DTP*DTP*DAP*DTP*DTP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DCP*DT)-3' | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-ray diffraction | 2.51 | 2009-05-26 | ||||
| 42 | 1T3N|1|T+ 1T3N|1|P | Template DNA strand, Primer DNA strand | Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP | X-ray diffraction | 2.3 | 2004-07-20 | ||||
| 43 | 3KD5|1|P | DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(4DG))-3') | Closed ternary complex of an RB69 gp43 fingers domain mutant complexed with an acyclic GMP terminated primer template pair and phosphonoformic acid. | X-ray diffraction | 2.69 | 2011-04-13 | ||||
| 44 | 1JJ8|1|A+ 1JJ8|1|B | 5'-D(*TP*GP*(5IT)P*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3' | Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations | X-ray diffraction | 2.75 | 2002-02-22 | ||||
| 45 | 1VRR|1|C+ 1VRR|1|D | 5'-D(*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3' | Crystal structure of the restriction endonuclease BstYI complex with DNA | X-ray diffraction | 2.7 | 2005-06-07 | ||||
| 46 | 3EBC|1|E+ 3EBC|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DGP*DGP*DGP*DC)-3', 5'-D(*DGP*DCP*DCP*DCP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Structure of N141A HincII with Cognate DNA | X-ray diffraction | 2.55 | 2008-12-23 | ||||
| 47 | 1N6J|1|C+ 1N6J|1|D | 5'-D(*AP*GP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*C)-3', 5'-D(*GP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*CP*T)-3' | Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2 | X-ray diffraction | 2.2 | 2003-11-11 | ||||
| 48 | 3K4X|1|C+ 3K4X|1|B | DNA (5'-D(*TP*TP*TP*TP*AP*TP*AP*CP*GP*AP*TP*GP*GP*G)-3'), DNA (5'-D(*CP*CP*CP*AP*TP*CP*GP*TP*AP*T)-3') | Eukaryotic Sliding Clamp PCNA Bound to DNA | X-ray diffraction | 2.98 | 2010-02-16 | ||||
| 49 | 2C2E|1|P+ 2C2E|1|T | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-ray diffraction | 2.61 | 2005-11-29 | ||||
| 50 | 1PZU|1|T+ 1PZU|1|V+ 1PZU|1|W+ 1PZU|1|X+ 1PZU|1|Y+ 1PZU|1|Z | 5'-D(*TP*TP*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*A)-3', 5'-D(*AP*AP*TP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)-3' | An asymmetric NFAT1-RHR homodimer on a pseudo-palindromic, Kappa-B site | X-ray diffraction | 3.1 | 2003-09-09 | ||||
| 51 | 1PYI|1|D+ 1PYI|1|E | DNA (5'-D(*TP*CP*GP*GP*CP*AP*AP*TP*TP*GP*CP*CP*GP*A)-3') | CRYSTAL STRUCTURE OF A PPR1-DNA COMPLEX: DNA RECOGNITION BY PROTEINS CONTAINING A ZN2CYS6 BINUCLEAR CLUSTER | X-ray diffraction | 3.2 | 1995-02-27 | ||||
| 52 | 1G9Z|1|C+ 1G9Z|1|E+ 1G9Z|1|D+ 1G9Z|1|F | 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*A)-3', 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*C)-3', 5'-D(P*GP*AP*CP*AP*GP*TP*TP*TP*CP*G)-3', 5'-D(P*GP*AP*CP*GP*TP*TP*TP*TP*GP*C)-3' | LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT COMPLEX WITH MAGNESIUM | X-ray diffraction | 1.8 | 2001-04-02 | ||||
| 53 | 1FJL|1|D+ 1FJL|1|E+ 1FJL|1|F | DNA (5'-D(*AP*AP*TP*AP*AP*TP*CP*TP*GP*AP*TP*TP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*AP*AP*TP*CP*AP*GP*AP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*GP*TP*AP*AP*TP*CP*TP*GP*AP*TP*TP*AP*C)-3') | HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE | X-ray diffraction | 2 | 1996-06-20 | ||||
| 54 | 1HCR|1|B+ 1HCR|1|C | DNA (5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3') | HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS | X-ray diffraction | 2.3 | 1994-04-30 | ||||
| 55 | 1QSS|1|C+ 1QSS|1|B | 5'-D(*AP*CP*CP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3', 5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DDG))-3' | DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-ray diffraction | 2.3 | 1999-08-16 | ||||
| 56 | 1QTM|1|C+ 1QTM|1|B | 5'-D(*AP*AP*AP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3', 5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DT))-3' | DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-ray diffraction | 2.3 | 1999-08-16 | ||||
| 57 | 1QSY|1|C+ 1QSY|1|B | 5'-D(*AP*TP*TP*GP*CP*GP*CP*CP*TP*P*GP*GP*TP*C)-3', 5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DA))-3' | DDATP-Trapped closed ternary complex of the large fragment of DNA Polymerase I from thermus aquaticus | X-ray diffraction | 2.3 | 1999-08-16 | ||||
| 58 | 3KTQ|1|C+ 3KTQ|1|B | DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3') | CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-ray diffraction | 2.3 | 1999-01-13 | ||||
| 59 | 1F2I|1|A+ 1F2I|1|B | 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3' | COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA | X-ray diffraction | 2.35 | 2001-09-14 | ||||
| 60 | 1F2I|1|C+ 1F2I|1|D | 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3' | COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA | X-ray diffraction | 2.35 | 2001-09-14 | ||||
| 61 | 1F2I|1|E+ 1F2I|1|F | 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3' | COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA | X-ray diffraction | 2.35 | 2001-09-14 | ||||
| 62 | 3GNA|1|D+ 3GNA|1|E | 5'-D(*AP*CP*TP*TP*AP*AP*CP*AP*AP*AP*AP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*TP*TP*TP*TP*GP*TP*TP*AP*AP*G)-3' | Crystal structure of the RAG1 nonamer-binding domain with DNA | X-ray diffraction | 2.4 | 2009-04-28 | ||||
| 63 | 1MHD|1|D+ 1MHD|1|C | DNA | CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA | X-ray diffraction | 2.8 | 1999-08-18 | ||||
| 64 | 1MDY|1|E+ 1MDY|1|F | DNA (5'-D(*TP*CP*AP*AP*CP*AP*GP*CP*TP*GP*TP*TP*GP*A)-3') | CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION | X-ray diffraction | 2.8 | 1994-08-31 | ||||
| 65 | 1MDY|1|G+ 1MDY|1|H | DNA (5'-D(*TP*CP*AP*AP*CP*AP*GP*CP*TP*GP*TP*TP*GP*A)-3') | CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION | X-ray diffraction | 2.8 | 1994-08-31 | ||||
| 66 | 3GNB|1|D+ 3GNB|1|E | 5'-D(*AP*AP*TP*TP*TP*TP*CP*AP*GP*AP*AP*AP*CP*C)-3', 5'-D(*AP*GP*GP*TP*TP*TP*CP*TP*GP*AP*AP*AP*AP*C)-3' | Crystal structure of the RAG1 nonamer-binding domain with DNA | X-ray diffraction | 3 | 2009-04-28 | ||||
| 67 | 2PRT|1|B+ 2PRT|1|C | DNA (5'-D(*CP*GP*CP*GP*GP*GP*GP*GP*CP*GP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*AP*CP*GP*CP*CP*CP*CP*CP*GP*CP*G)-3') | Structure of the Wilms Tumor Suppressor Protein Zinc Finger Domain Bound to DNA | X-ray diffraction | 3.15 | 2008-03-04 | ||||
| 68 | 1K8J|1|A+ 1K8J|1|B | FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX | NMR STRUCTURE OF THE CK14 DNA DUPLEX: A PORTION OF THE KNOWN NF-kB SEQUENCE CK1 | Solution NMR | 2003-04-15 | |||||
| 69 | 2L2U|1|A+ 2L2U|1|B | DNA (5'-D(*CP*AP*GP*CP*GP*(3DR)P*GP*TP*AP*TP*AP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*TP*AP*(3DR)P*AP*CP*AP*CP*GP*CP*TP*G)-3') | NMR Solution Structures of +3 (5' staggered) Bistranded Abasic Site Lesions in DNA | Solution NMR | 2010-11-03 | |||||
| 70 | 1LFU|1|A+ 1LFU|1|B | 5'-D(*GP*CP*GP*CP*AP*TP*GP*AP*TP*TP*GP*CP*CP*C)-3', 5'-D(*GP*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*CP*GP*C)-3' | NMR Solution Structure of the Extended PBX Homeodomain Bound to DNA | Solution NMR | 2003-01-14 | |||||
| 71 | 1K8L|1|A+ 1K8L|1|B | FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX | XBY6: An analog of CK14 containing 6 dithiophosphate groups | Solution NMR | 2003-04-15 | |||||
| 72 | 1AHD|1|A+ 1AHD|1|B | DNA (5'-D(*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3') | DETERMINATION OF THE NMR SOLUTION STRUCTURE OF AN ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX | Solution NMR | 1993-10-31 | |||||
| 73 | 2K7F|1|B+ 2K7F|1|C | 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP*DA)-3', 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3' | HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA | Solution NMR | 2009-09-08 | |||||
| 74 | 2JPA|1|B+ 2JPA|1|C | DNA (5'-D(P*DCP*DGP*DCP*DGP*DGP*DGP*DGP*DGP*DCP*DGP*DTP*DCP*DTP*DG)-3'), DNA (5'-D(P*DCP*DAP*DGP*DAP*DCP*DGP*DCP*DCP*DCP*DCP*DCP*DGP*DCP*DG)-3') | synthetic construct | Structure of the Wilms Tumor Suppressor Protein Zinc Finger Domain Bound to DNA | Solution NMR | 2007-10-30 | ||||
| 75 | 2O8K|1|B+ 2O8K|1|C | 5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)-3', 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)-3' | NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element | Solution NMR | 2007-07-17 | |||||
| 76 | 2O9L|1|B+ 2O9L|1|C | 5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)-3', 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)-3' | AMBER refined NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element | Solution NMR | 2007-07-17 | |||||
| 77 | 2JXI|1|C+ 2JXI|1|D | DNA (5'-D(*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DCP*DCP*DTP*DTP*DT)-3'), DNA (5'-D(*DAP*DAP*DAP*DGP*DGP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DC)-3') | synthetic construct | Solution structure of the DNA-binding domain of Pseudomonas putida Proline utilization A (putA) bound to GTTGCA DNA sequence | Solution NMR | 2008-10-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2PYJ|1|K+2PYJ|1|J | Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) | X-RAY DIFFRACTION | 2.03 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 2 | 3K4X|1|C+3K4X|1|B | Eukaryotic Sliding Clamp PCNA Bound to DNA | X-RAY DIFFRACTION | 2.98 | 14 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 3 | 1HCR|1|B+1HCR|1|C | HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS | X-RAY DIFFRACTION | 2.3 | 14 | enzyme,recombinase | |
| 4 | 2PRT|1|B+2PRT|1|C | Structure of the Wilms Tumor Suppressor Protein Zinc Finger Domain Bound to DNA | X-RAY DIFFRACTION | 3.15 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 5 | 2C2E|1|P+2C2E|1|T | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-RAY DIFFRACTION | 2.61 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 6 | 3KD1|1|P | Closed binary complex of an RB69 gp43 fingers domain mutant complexed with an acyclic GMP terminated primer template pair. | X-RAY DIFFRACTION | 2.66 | 35 | double helix,structure | enzyme,polymerase,transferase |
| 7 | 3KD5|1|P | Closed ternary complex of an RB69 gp43 fingers domain mutant complexed with an acyclic GMP terminated primer template pair and phosphonoformic acid. | X-RAY DIFFRACTION | 2.69 | 30 | double helix,structure | enzyme,polymerase,transferase |
| 8 | 1AHD|1|A+1AHD|1|B | DETERMINATION OF THE NMR SOLUTION STRUCTURE OF AN ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX | SOLUTION NMR | 14 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 9 | 2L2U|1|A+2L2U|1|B | NMR Solution Structures of +3 (5' staggered) Bistranded Abasic Site Lesions in DNA | SOLUTION NMR | 14 | double helix,structure | ||
| 10 | 1K8L|1|A+1K8L|1|B | XBY6: An analog of CK14 containing 6 dithiophosphate groups | SOLUTION NMR | 14 | B-form double helix,double helix,structure | ||
| 11 | 2JPA|1|B+2JPA|1|C | Structure of the Wilms Tumor Suppressor Protein Zinc Finger Domain Bound to DNA | SOLUTION NMR | 14 | double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 12 | 2YVH|1|G+2YVH|1|H | Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR | X-RAY DIFFRACTION | 2.5 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription |
| 13 | 2YVH|1|E+2YVH|1|F | Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR | X-RAY DIFFRACTION | 2.5 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription |
| 14 | 3EBC|1|E+3EBC|1|F | Structure of N141A HincII with Cognate DNA | X-RAY DIFFRACTION | 2.55 | 14 | double helix,structure | enzyme,hydrolase,nuclease |
| 15 | 3CMY|1|B+3CMY|1|C | Structure of a homeodomain in complex with DNA | X-RAY DIFFRACTION | 1.95 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 16 | 2VBN|1|C+2VBN|1|E+2VBN|1|S+2VBN|1|T | Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers | X-RAY DIFFRACTION | 1.9 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 17 | 2VBL|1|C+2VBL|1|E+2VBL|1|S+2VBL|1|T | Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers | X-RAY DIFFRACTION | 1.8 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 18 | 1N3E|1|C+1N3E|1|E+1N3E|1|D+1N3E|1|F | Crystal structure of I-CreI bound to a palindromic DNA sequence I (palindrome of left side of wildtype DNA target sequence) | X-RAY DIFFRACTION | 2.5 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 19 | 1N3E|1|I+1N3E|1|K+1N3E|1|J+1N3E|1|L | Crystal structure of I-CreI bound to a palindromic DNA sequence I (palindrome of left side of wildtype DNA target sequence) | X-RAY DIFFRACTION | 2.5 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 20 | 1N3F|1|C+1N3F|1|E+1N3F|1|D+1N3F|1|F | Crystal structure of I-CreI bound to a palindromic DNA sequence II (palindrome of right side of wildtype DNA target sequence) | X-RAY DIFFRACTION | 2 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 21 | 1N3F|1|I+1N3F|1|K+1N3F|1|J+1N3F|1|L | Crystal structure of I-CreI bound to a palindromic DNA sequence II (palindrome of right side of wildtype DNA target sequence) | X-RAY DIFFRACTION | 2 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 22 | 1G9Z|1|C+1G9Z|1|E+1G9Z|1|D+1G9Z|1|F | LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT COMPLEX WITH MAGNESIUM | X-RAY DIFFRACTION | 1.8 | 14 | double helix,structure | enzyme,hydrolase,nuclease |
| 23 | 3MXA|1|C+3MXA|1|E+3MXA|1|D+3MXA|1|F | Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus | X-RAY DIFFRACTION | 2.3 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 24 | 2HHS|1|C+2HHS|1|B | O6-methyl:C pair in the polymerase-10 basepair position | X-RAY DIFFRACTION | 1.8 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 25 | 1K8J|1|A+1K8J|1|B | NMR STRUCTURE OF THE CK14 DNA DUPLEX: A PORTION OF THE KNOWN NF-kB SEQUENCE CK1 | SOLUTION NMR | 14 | B-form double helix,double helix,structure | ||
| 26 | 1FJL|1|D+1FJL|1|E+1FJL|1|F | HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE | X-RAY DIFFRACTION | 2 | 14 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 27 | 1QSS|1|C+1QSS|1|B | DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-RAY DIFFRACTION | 2.3 | 14 | double helix,structure | enzyme,polymerase,transferase |
| 28 | 1QTM|1|C+1QTM|1|B | DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-RAY DIFFRACTION | 2.3 | 14 | double helix,structure | enzyme,polymerase,transferase |
| 29 | 1QSY|1|C+1QSY|1|B | DDATP-Trapped closed ternary complex of the large fragment of DNA Polymerase I from thermus aquaticus | X-RAY DIFFRACTION | 2.3 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 30 | 3KTQ|1|C+3KTQ|1|B | CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-RAY DIFFRACTION | 2.3 | 14 | double helix,structure | enzyme,polymerase,transferase |
| 31 | 3GNB|1|D+3GNB|1|E | Crystal structure of the RAG1 nonamer-binding domain with DNA | X-RAY DIFFRACTION | 3 | 14 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 32 | 3GNA|1|D+3GNA|1|E | Crystal structure of the RAG1 nonamer-binding domain with DNA | X-RAY DIFFRACTION | 2.4 | 14 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 33 | 3AAF|1|C+3AAF|1|D | Structure of WRN RQC domain bound to double-stranded DNA | X-RAY DIFFRACTION | 1.9 | 14 | double helix,structure | enzyme,helicase,hydrolase |
| 34 | 1PZU|1|T+1PZU|1|V+1PZU|1|W+1PZU|1|X+1PZU|1|Y+1PZU|1|Z | An asymmetric NFAT1-RHR homodimer on a pseudo-palindromic, Kappa-B site | X-RAY DIFFRACTION | 3.1 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 35 | 2D5V|1|E+2D5V|1|F | Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter | X-RAY DIFFRACTION | 2 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 36 | 1ZET|1|T+1ZET|1|P | X-ray data do not support hoogsteen base-pairing during replication by human polymerase iota | X-RAY DIFFRACTION | 2.3 | 14 | double helix,structure | enzyme,polymerase,transferase |
| 37 | 1JJ8|1|A+1JJ8|1|B | Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations | X-RAY DIFFRACTION | 2.75 | 14 | B-form double helix,double helix,structure | enzyme,recombinase |
| 38 | 1MHD|1|D+1MHD|1|C | CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA | X-RAY DIFFRACTION | 2.8 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),SMAD-like,regulatory,transcription |
| 39 | 1LFU|1|A+1LFU|1|B | NMR Solution Structure of the Extended PBX Homeodomain Bound to DNA | SOLUTION NMR | 14 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 40 | 1T3N|1|T+1T3N|1|P | Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP | X-RAY DIFFRACTION | 2.3 | 14 | double helix,structure | enzyme,polymerase,transferase |
| 41 | 2D5V|1|C+2D5V|1|D | Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter | X-RAY DIFFRACTION | 2 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 42 | 2EUX|1|B+2EUX|1|C | Structure of a Ndt80-DNA complex (MSE VARIANT vA4G) | X-RAY DIFFRACTION | 1.57 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 43 | 2EVG|1|B+2EVG|1|C | Structure of a Ndt80-DNA complex (MSE mutant mA7T) | X-RAY DIFFRACTION | 1.55 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 44 | 2EUZ|1|B+2EUZ|1|C | Structure of a Ndt80-DNA complex (MSE mutant mC5T) | X-RAY DIFFRACTION | 1.56 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 45 | 1MNN|1|B+1MNN|1|C | Structure of the sporulation specific transcription factor Ndt80 bound to DNA | X-RAY DIFFRACTION | 1.4 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 46 | 2EUW|1|B+2EUW|1|C | Structure of a Ndt80-DNA complex (MSE mutant mA4T) | X-RAY DIFFRACTION | 1.68 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 47 | 2EVJ|1|B+2EVJ|1|C | Structure of an Ndt80-DNA complex (MSE mutant mA9C) | X-RAY DIFFRACTION | 1.89 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 48 | 2EVH|1|B+2EVH|1|C | Structure of a Ndt80-DNA complex (MSE mutant mA7G) | X-RAY DIFFRACTION | 1.989 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 49 | 2EUV|1|B+2EUV|1|C | Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes | X-RAY DIFFRACTION | 1.94 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 50 | 2EVI|1|B+2EVI|1|C | Structure of a Ndt80-DNA complex (MSE mutant mA8T) | X-RAY DIFFRACTION | 1.8 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 51 | 2EVF|1|B+2EVF|1|C | Structure of a Ndt80-DNA complex (MSE mutant mA6T) | X-RAY DIFFRACTION | 1.56 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 52 | 2ETW|1|B+2ETW|1|C | Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes | X-RAY DIFFRACTION | 1.67 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 53 | 1MDY|1|G+1MDY|1|H | CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION | X-RAY DIFFRACTION | 2.8 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription |
| 54 | 1MDY|1|E+1MDY|1|F | CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION | X-RAY DIFFRACTION | 2.8 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription |
| 55 | 3D1N|1|C+3D1N|1|D | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-RAY DIFFRACTION | 2.51 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 56 | 1PYI|1|D+1PYI|1|E | CRYSTAL STRUCTURE OF A PPR1-DNA COMPLEX: DNA RECOGNITION BY PROTEINS CONTAINING A ZN2CYS6 BINUCLEAR CLUSTER | X-RAY DIFFRACTION | 3.2 | 14 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription |
| 57 | 2JXI|1|C+2JXI|1|D | Solution structure of the DNA-binding domain of Pseudomonas putida Proline utilization A (putA) bound to GTTGCA DNA sequence | SOLUTION NMR | 14 | double helix,structure | enzyme,oxidoreductase,regulatory,transcription | |
| 58 | 1VRR|1|C+1VRR|1|D | Crystal structure of the restriction endonuclease BstYI complex with DNA | X-RAY DIFFRACTION | 2.7 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 59 | 1N6J|1|C+1N6J|1|D | Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2 | X-RAY DIFFRACTION | 2.2 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription |
| 60 | 1F2I|1|A+1F2I|1|B | COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA | X-RAY DIFFRACTION | 2.35 | 14 | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 61 | 1F2I|1|C+1F2I|1|D | COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA | X-RAY DIFFRACTION | 2.35 | 14 | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 62 | 1F2I|1|E+1F2I|1|F | COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA | X-RAY DIFFRACTION | 2.35 | 14 | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 63 | 3LNQ|1|B+3LNQ|1|C | Structure of Aristaless homeodomain in complex with DNA | X-RAY DIFFRACTION | 2.25 | 14 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 64 | 3D1N|1|A+3D1N|1|B | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-RAY DIFFRACTION | 2.51 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 65 | 3D1N|1|E+3D1N|1|F | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-RAY DIFFRACTION | 2.51 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 66 | 3D1N|1|G+3D1N|1|H | Structure of human Brn-5 transcription factor in complex with corticotrophin-releasing hormone gene promoter | X-RAY DIFFRACTION | 2.51 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 67 | 2K7F|1|B+2K7F|1|C | HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA | SOLUTION NMR | 14 | double helix,structure | DNA replication/repair,regulatory | |
| 68 | 2O9L|1|B+2O9L|1|C | AMBER refined NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element | SOLUTION NMR | 14 | double helix,structure | regulatory,transcription | |
| 69 | 2O8K|1|B+2O8K|1|C | NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element | SOLUTION NMR | 14 | double helix,structure | regulatory,transcription | |
| 70 | 2H7F|1|Z+2H7F|1|Y | Structure of variola topoisomerase covalently bound to DNA | X-RAY DIFFRACTION | 2.7 | 14 | B-form double helix,double helix,structure | enzyme,isomerase |
| 71 | 2H7G|1|Z+2H7G|1|Y | Structure of variola topoisomerase non-covalently bound to DNA | X-RAY DIFFRACTION | 1.9 | 14 | B-form double helix,double helix,structure | enzyme,isomerase |
| 72 | 1UA1|1|C+1UA1|1|B | Structure of aminofluorene adduct paired opposite cytosine at the polymerase active site. | X-RAY DIFFRACTION | 2 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 73 | 1LV5|1|F+1LV5|1|E | Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP | X-RAY DIFFRACTION | 1.95 | 14 | double helix,structure | enzyme,polymerase,transferase |
| 74 | 1LV5|1|D+1LV5|1|C | Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP | X-RAY DIFFRACTION | 1.95 | 14 | double helix,structure | enzyme,polymerase,transferase |
| 75 | 1UA0|1|C+1UA0|1|B | Aminofluorene DNA adduct at the pre-insertion site of a DNA polymerase | X-RAY DIFFRACTION | 2.1 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 76 | 2PYJ|1|R+2PYJ|1|Q | Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) | X-RAY DIFFRACTION | 2.03 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 77 | 2PYJ|1|Y+2PYJ|1|X | Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex) | X-RAY DIFFRACTION | 2.03 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
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