Equivalence class DNA_all_28652.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3BSE|1|A+ 3BSE|1|B (rep) | DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3') | Crystal structure analysis of a 16-base-pair B-DNA | X-ray diffraction | 1.6 | 2008-12-23 | ||||
| 2 | 3NCI|1|T+ 3NCI|1|P | DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolution | X-ray diffraction | 1.79 | 2011-02-02 | ||||
| 3 | 2W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|H | 5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*GP*CP *TP*AP*AP*AP*CP*AP*AP*G)-3', 5'-D(*CP*BRUP*BRUP*GP*TP*TP*TP*AP*GP*CP*TP*AP *AP*AP*CP*AP*BRUP*T)-3' | Escherichia coli | Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene Regulation | X-ray diffraction | 1.85 | 2009-02-17 | |||
| 4 | 1JX4|1|T+ 1JX4|1|P | 5'-D(*T*TP*CP*AP*TP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3' | Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-ray diffraction | 1.7 | 2001-10-05 | ||||
| 5 | 3K57|1|T+ 3K57|1|P | DNA (5'-D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3') | Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex | X-ray diffraction | 2.08 | 2010-02-09 | ||||
| 6 | 3NGI|1|T+ 3NGI|1|P | DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dG | X-ray diffraction | 1.886 | 2011-01-26 | ||||
| 7 | 2OG0|1|C+ 2OG0|1|D | 5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3', 5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3' | Crystal Structure of the Lambda Xis-DNA complex | X-ray diffraction | 1.9 | 2007-03-13 | ||||
| 8 | 3NDK|1|T+ 3NDK|1|P | DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dG | X-ray diffraction | 2 | 2011-01-26 | ||||
| 9 | 3NAE|1|T+ 3NAE|1|P | DNA (5'-D(*TP*CP*AP*(G35)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin | X-ray diffraction | 2.003 | 2010-09-15 | ||||
| 10 | 3CFP|1|T+ 3CFP|1|P | DNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*(DOC))-3') | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1 | X-ray diffraction | 2.5 | 2009-03-10 | ||||
| 11 | 1S9F|1|I+ 1S9F|1|E | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3' | DPO with AT matched | X-ray diffraction | 2 | 2005-02-15 | ||||
| 12 | 1S9F|1|J+ 1S9F|1|F | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3' | DPO with AT matched | X-ray diffraction | 2 | 2005-02-15 | ||||
| 13 | 1S9F|1|K+ 1S9F|1|G | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3' | DPO with AT matched | X-ray diffraction | 2 | 2005-02-15 | ||||
| 14 | 1S9F|1|L+ 1S9F|1|H | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3' | DPO with AT matched | X-ray diffraction | 2 | 2005-02-15 | ||||
| 15 | 3NE6|1|T+ 3NE6|1|P | DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dG | X-ray diffraction | 2.001 | 2011-01-26 | ||||
| 16 | 1RYS|1|D+ 1RYS|1|C | 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3' | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-ray diffraction | 2.03 | 2004-02-10 | ||||
| 17 | 1RYS|1|F+ 1RYS|1|E | 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3' | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-ray diffraction | 2.03 | 2004-02-10 | ||||
| 18 | 2JEJ|1|T+ 2JEJ|1|P | 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*CP*G)-3' | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 1.86 | 2007-03-13 | ||||
| 19 | 1WB9|1|E+ 1WB9|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3', 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3' | Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatch | X-ray diffraction | 2.1 | 2006-01-18 | ||||
| 20 | 3DW9|1|E+ 3DW9|1|F | DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3') | SgrAI with cognate DNA and manganese bound | X-ray diffraction | 2.2 | 2008-08-19 | ||||
| 21 | 2XC9|1|T+ 2XC9|1|P | 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP*TP*TP* CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*G)-3' | synthetic construct | BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORM | X-ray diffraction | 2.2 | 2010-09-08 | |||
| 22 | 3DVO|1|E+ 3DVO|1|F | DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3') | synthetic construct | SgrAI with cognate DNA and calcium bound | X-ray diffraction | 1.892 | 2008-08-19 | |||
| 23 | 3DVO|1|G+ 3DVO|1|H | DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3') | synthetic construct | SgrAI with cognate DNA and calcium bound | X-ray diffraction | 1.892 | 2008-08-19 | |||
| 24 | 3M9N|1|T+ 3M9N|1|P | DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*GP*C)-3') | Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion | X-ray diffraction | 1.93 | 2010-06-16 | ||||
| 25 | 3L8B|1|C+ 3L8B|1|D | DNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3') | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-ray diffraction | 2.15 | 2010-03-09 | ||||
| 26 | 3L8B|1|E+ 3L8B|1|F | DNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3') | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-ray diffraction | 2.15 | 2010-03-09 | ||||
| 27 | 2BQ3|1|T+ 2BQ3|1|P | 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2 | 2005-06-22 | ||||
| 28 | 2UVV|1|T+ 2UVV|1|P | 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3' | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-ray diffraction | 2.2 | 2007-05-08 | ||||
| 29 | 3OSN|1|B+ 3OSN|1|C | 5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3' | Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase Iota | X-ray diffraction | 1.9 | 2010-10-20 | ||||
| 30 | 2C28|1|T+ 2C28|1|P | 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-ray diffraction | 2.27 | 2005-11-29 | ||||
| 31 | 2UVW|1|T+ 2UVW|1|P | 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3' | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-ray diffraction | 2.09 | 2007-05-08 | ||||
| 32 | 2W9B|1|E+ 2W9B|1|C | 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3' | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-ray diffraction | 2.28 | 2009-05-12 | ||||
| 33 | 2W9B|1|F+ 2W9B|1|D | 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3' | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-ray diffraction | 2.28 | 2009-05-12 | ||||
| 34 | 3LZI|1|T+ 3LZI|1|P | DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine | X-ray diffraction | 2.3 | 2010-05-12 | ||||
| 35 | 2P5L|1|A+ 2P5L|1|B | DNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3') | Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator site | X-ray diffraction | 2.85 | 2008-03-11 | ||||
| 36 | 2P5L|1|E+ 2P5L|1|F | DNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3') | Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator site | X-ray diffraction | 2.85 | 2008-03-11 | ||||
| 37 | 3NHG|1|T+ 3NHG|1|P | DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dG | X-ray diffraction | 2.5 | 2011-01-26 | ||||
| 38 | 2BQU|1|T+ 2BQU|1|P | 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2.5 | 2005-06-23 | ||||
| 39 | 3K5L|1|T+ 3K5L|1|P | DNA (5'-D(*TP*AP*TP*(3DR)P*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3') | Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complex | X-ray diffraction | 2.7 | 2010-02-02 | ||||
| 40 | 2JEF|1|T+ 2JEF|1|P | 5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3' | The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 2.17 | 2007-03-13 | ||||
| 41 | 2BR0|1|T+ 2BR0|1|P | 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2.17 | 2005-06-23 | ||||
| 42 | 2BQR|1|T+ 2BQR|1|P | 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2.37 | 2005-06-23 | ||||
| 43 | 1B3T|1|C+ 1B3T|1|D | DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3') | EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX | X-ray diffraction | 2.2 | 1998-12-15 | ||||
| 44 | 2JEG|1|T+ 2JEG|1|P | 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3' | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 2.38 | 2007-03-13 | ||||
| 45 | 2JEI|1|T+ 2JEI|1|P | 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3' | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 2.39 | 2007-03-13 | ||||
| 46 | 3PR5|1|T | DNA (5'-D(*TP*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') | Dpo4 Y12A mutant incorporating ADP opposite template dT | X-ray diffraction | 2.4 | 2011-02-23 | ||||
| 47 | 3GIJ|1|E+ 3GIJ|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-ray diffraction | 2.4 | 2009-05-19 | ||||
| 48 | 3GIJ|1|J+ 3GIJ|1|H | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-ray diffraction | 2.4 | 2009-05-19 | ||||
| 49 | 2W9A|1|T+ 2W9A|1|P | 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3' | Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTP | X-ray diffraction | 2.6 | 2009-05-12 | ||||
| 50 | 2J6U|1|T+ 2J6U|1|P | 5'-D(*TP*CP*AP*C G32P*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3' | synthetic construct | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP. | X-ray diffraction | 2.5 | 2006-11-22 | |||
| 51 | 2XCA|1|T+ 2XCA|1|P | 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3' | synthetic construct | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORM | X-ray diffraction | 2.5 | 2010-09-08 | |||
| 52 | 2DTU|1|E+ 2DTU|1|F | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 2006-12-05 | ||||
| 53 | 2DTU|1|G+ 2DTU|1|H | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 2006-12-05 | ||||
| 54 | 2DTU|1|I+ 2DTU|1|J | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 2006-12-05 | ||||
| 55 | 2DTU|1|K+ 2DTU|1|L | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 2006-12-05 | ||||
| 56 | 2C22|1|T+ 2C22|1|P | 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-ray diffraction | 2.56 | 2005-11-29 | ||||
| 57 | 1WBD|1|E+ 1WBD|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3', 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3' | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatch | X-ray diffraction | 2.4 | 2006-01-18 | ||||
| 58 | 1S97|1|I+ 1S97|1|E | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 2004-04-27 | ||||
| 59 | 1S97|1|J+ 1S97|1|F | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 2004-04-27 | ||||
| 60 | 1S97|1|K+ 1S97|1|G | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 2004-04-27 | ||||
| 61 | 1S97|1|L+ 1S97|1|H | 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 2004-04-27 | ||||
| 62 | 1R0O|1|C+ 1R0O|1|D | Ecdysone Response Element | Crystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex | X-ray diffraction | 2.24 | 2003-10-21 | ||||
| 63 | 2BNZ|1|E+ 2BNZ|1|F | 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*GP*AP*TP*TP*AP*GP*C)-3', 5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3' | synthetic construct | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeats | X-ray diffraction | 2.6 | 2006-03-15 | |||
| 64 | 1IG9|1|T+ 1IG9|1|P | 5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*(DOC))-3' | Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase | X-ray diffraction | 2.6 | 2001-06-11 | ||||
| 65 | 3PR4|1|T | DNA (5'-D(*TP*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') | Dpo4 Y12A mutant incorporating dADP opposite template dT | X-ray diffraction | 2.65 | 2011-02-23 | ||||
| 66 | 1WBB|1|E+ 1WBB|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3', 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3' | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatch | X-ray diffraction | 2.5 | 2006-01-18 | ||||
| 67 | 2UVU|1|T+ 2UVU|1|P | 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3' | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-ray diffraction | 2.7 | 2007-05-08 | ||||
| 68 | 3GIL|1|E+ 3GIL|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3' | Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair | X-ray diffraction | 2.71 | 2009-05-19 | ||||
| 69 | 3GIL|1|J+ 3GIL|1|H | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3' | Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair | X-ray diffraction | 2.71 | 2009-05-19 | ||||
| 70 | 3EPI|1|B+ 3EPI|1|C | 5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3' | Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTP | X-ray diffraction | 2.9 | 2008-12-16 | ||||
| 71 | 2CAX|1|U+ 2CAX|1|Y | 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*CP*AP*CP*AP*AP*GP*C)-3', 5'-D(*CP*TP*TP*GP*TP*GP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3' | STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATS | X-ray diffraction | 2.9 | 2006-03-15 | ||||
| 72 | 3CFR|1|T+ 3CFR|1|P | DNA (5'-D(*DTP*DCP*DAP*DAP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*(DOC))-3') | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2 | X-ray diffraction | 2.4 | 2009-03-10 | ||||
| 73 | 2XCP|1|F+ 2XCP|1|E | 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3' | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORM | X-ray diffraction | 2.6 | 2010-09-08 | ||||
| 74 | 2XCP|1|T+ 2XCP|1|P | 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3' | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORM | X-ray diffraction | 2.6 | 2010-09-08 | ||||
| 75 | 2J6T|1|T+ 2J6T|1|P | 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | X-ray diffraction | 2.6 | 2006-11-22 | ||||
| 76 | 2VA2|1|D+ 2VA2|1|C | 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3' | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-ray diffraction | 2.8 | 2007-10-30 | ||||
| 77 | 2VA2|1|F+ 2VA2|1|E | 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3' | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-ray diffraction | 2.8 | 2007-10-30 | ||||
| 78 | 2BNW|1|E+ 2BNW|1|F | 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3', 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3' | synthetic construct | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-ray diffraction | 2.45 | 2006-03-15 | |||
| 79 | 2BNW|1|G+ 2BNW|1|H | 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3', 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3' | synthetic construct | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-ray diffraction | 2.45 | 2006-03-15 | |||
| 80 | 3MKW|1|T+ 3MKW|1|U | DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') | Structure of sopB(155-272)-18mer complex, I23 form | X-ray diffraction | 2.99 | 2010-05-05 | ||||
| 81 | 3CQ8|1|T+ 3CQ8|1|P | DNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*DC)-3') | Ternary complex of the L415F mutant RB69 exo(-)polymerase | X-ray diffraction | 2.5 | 2008-09-02 | ||||
| 82 | 2J6S|1|T+ 2J6S|1|P | 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3' | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | X-ray diffraction | 2.5 | 2006-11-22 | ||||
| 83 | 2OZS|1|T+ 2OZS|1|P | Template DNA, Primer DNA | Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMP | X-ray diffraction | 2.75 | 2007-10-23 | ||||
| 84 | 2C2D|1|T+ 2C2D|1|P | 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | synthetic construct | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-ray diffraction | 2.57 | 2005-11-29 | |||
| 85 | 1P8K|1|A+ 1P8K|1|C+ 1P8K|1|D+ 1P8K|1|B | 5'-D(P*GP*CP*GP*CP*GP*CP*TP*GP*AP*GP*GP*AP*GP*GP*TP*TP*TP*C)-3', 5'-D(P*TP*CP*TP*GP*TP*AP*AP*AP*GP*CP*GP*CP*A)-3', 5'-D(P*GP*CP*GP*CP*TP*TP*TP*AP*CP*AP*GP*AP*GP*AP*AP*A)-3', 5'-D(P*CP*CP*TP*CP*CP*TP*CP*AP*GP*CP*GP*CP*GP*CP*T)-3' | The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factor | X-ray diffraction | 2.6 | 2004-01-20 | ||||
| 86 | 2IVH|1|B+ 2IVH|1|C | 5'-D(*GP*GP*AP*AP*TP*TP*CP*GP*AP*TP *CP*GP*AP*AP*TP*TP*CP*C)-3' | Escherichia coli | Crystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNA | X-ray diffraction | 2.8 | 2007-01-02 | |||
| 87 | 3EPG|1|B+ 3EPG|1|C | 5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3' | Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine | X-ray diffraction | 2.5 | 2008-12-16 | ||||
| 88 | 2V4R|1|T+ 2V4R|1|P | 5'-D(*TP*CP*AP*CP*M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3' | synthetic construct | Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine | X-ray diffraction | 2.5 | 2009-06-16 | |||
| 89 | 1Q9X|1|E+ 1Q9X|1|I | 5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3' | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-ray diffraction | 2.69 | 2004-04-27 | ||||
| 90 | 1Q9X|1|F+ 1Q9X|1|J | 5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3' | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-ray diffraction | 2.69 | 2004-04-27 | ||||
| 91 | 1Q9X|1|G+ 1Q9X|1|K | 5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3' | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-ray diffraction | 2.69 | 2004-04-27 | ||||
| 92 | 1Q9X|1|H+ 1Q9X|1|L | 5'-GCGGACTGCTTAC(dideoxycytidine)-3', 5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3' | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-ray diffraction | 2.69 | 2004-04-27 | ||||
| 93 | 1KB6|1|C+ 1KB6|1|D | 5'-D(*CP*AP*CP*GP*GP*GP*TP*GP*AP*AP*TP*GP*AP*GP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*CP*TP*CP*AP*TP*TP*CP*AP*CP*CP*CP*GP*TP*G)-3' | Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element | X-ray diffraction | 2.7 | 2002-05-03 | ||||
| 94 | 3GIM|1|E+ 3GIM|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3' | Dpo4 extension ternary complex with oxoG(anti)-G(syn) pair | X-ray diffraction | 2.7 | 2009-05-19 | ||||
| 95 | 3FBD|1|B+ 3FBD|1|C | 5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3' | Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNA | X-ray diffraction | 2.9 | 2009-11-03 | ||||
| 96 | 3FBD|1|E+ 3FBD|1|F | 5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3' | Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNA | X-ray diffraction | 2.9 | 2009-11-03 | ||||
| 97 | 3LZJ|1|T+ 3LZJ|1|P | DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3') | RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine | X-ray diffraction | 2.05 | 2010-05-19 | ||||
| 98 | 1KB4|1|C+ 1KB4|1|D | 5'-D(*CP*AP*CP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*A)-3', 5'-D(*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*GP*TP*G)-3' | Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response Element | X-ray diffraction | 2.8 | 2002-05-03 | ||||
| 99 | 3MKZ|1|C+ 3MKZ|1|D | DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') | Structure of SopB(155-272)-18mer complex, P21 form | X-ray diffraction | 2.98 | 2010-05-05 | ||||
| 100 | 2VA3|1|T+ 2VA3|1|P | 5'-D(*TP*TP*CP*AP*DFTP*TP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3' | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-ray diffraction | 2.98 | 2007-10-30 | ||||
| 101 | 1S0N|1|T+ 1S0N|1|P | 5'-D(*TP*AP*CP*GP*AP*CP*GP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*CP*G)-3' | Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift | X-ray diffraction | 2.8 | 2004-03-30 | ||||
| 102 | 1Q9Y|1|T+ 1Q9Y|1|P | 5'-AC(8-OXOGUANOSINE)GGTAAGCAGTCCGCG-3', 5'-GCGGACTGCTTAC(DIDEOXYCYTIDINE)-3' | CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA | X-ray diffraction | 2.8 | 2004-04-27 | ||||
| 103 | 3MKZ|1|Y+ 3MKZ|1|Z | DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') | Structure of SopB(155-272)-18mer complex, P21 form | X-ray diffraction | 2.98 | 2010-05-05 | ||||
| 104 | 2DY4|1|E+ 2DY4|1|F | 5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3' | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-ray diffraction | 2.65 | 2007-01-09 | ||||
| 105 | 2DY4|1|G+ 2DY4|1|H | 5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3' | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-ray diffraction | 2.65 | 2007-01-09 | ||||
| 106 | 2DY4|1|I+ 2DY4|1|J | 5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3' | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-ray diffraction | 2.65 | 2007-01-09 | ||||
| 107 | 2DY4|1|K+ 2DY4|1|L | 5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3' | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-ray diffraction | 2.65 | 2007-01-09 | ||||
| 108 | 2NL8|1|W | 18-nt PEN element of the SV40 DNA origin | The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3) | X-ray diffraction | 2.3 | 2006-12-12 | ||||
| 109 | 2OZM|1|T+ 2OZM|1|P | Template DNA, Primer DNA | Crystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analog | X-ray diffraction | 2.86 | 2007-10-23 | ||||
| 110 | 3MKY|1|T+ 3MKY|1|U | DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') | Structure of SopB(155-323)-18mer DNA complex, I23 form | X-ray diffraction | 2.86 | 2010-05-05 | ||||
| 111 | 2F8X|1|X+ 2F8X|1|Y | 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3', 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' | Crystal structure of activated Notch, CSL and MAML on HES-1 promoter DNA sequence | X-ray diffraction | 3.25 | 2006-04-04 | ||||
| 112 | 2UVR|1|T+ 2UVR|1|P | 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3' | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-ray diffraction | 2.9 | 2007-05-08 | ||||
| 113 | 1R4I|1|C+ 1R4I|1|D | 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*AP*AP*GP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*TP*CP*TP*TP*GP*AP*TP*GP*TP*TP*CP*TP*GP*G)-3' | Crystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response Element | X-ray diffraction | 3.1 | 2004-06-29 | ||||
| 114 | 1R0N|1|C+ 1R0N|1|D | Ecdsyone Response Element, Ecdysone Response Element | Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex | X-ray diffraction | 2.6 | 2003-10-21 | ||||
| 115 | 3NGD|1|C+ 3NGD|1|D | 5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3' | Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase Iota | X-ray diffraction | 2.8 | 2010-10-20 | ||||
| 116 | 2W8L|1|T+ 2W8L|1|P | 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3' | Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientation | X-ray diffraction | 3 | 2009-01-27 | ||||
| 117 | 1KB2|1|C+ 1KB2|1|D | 5'-D(*CP*AP*CP*GP*GP*TP*TP*CP*AP*CP*GP*AP*GP*GP*TP*TP*CP*A)-3', 5'-D(*TP*GP*AP*AP*CP*CP*TP*CP*GP*TP*GP*AP*AP*CP*CP*GP*TP*G)-3' | Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response Element | X-ray diffraction | 2.7 | 2002-05-03 | ||||
| 118 | 3GIK|1|E+ 3GIK|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3' | Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pair | X-ray diffraction | 2.9 | 2009-05-19 | ||||
| 119 | 2W9C|1|E+ 2W9C|1|C | 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3' | Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTP | X-ray diffraction | 2.9 | 2009-05-12 | ||||
| 120 | 2W9C|1|F+ 2W9C|1|D | 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3' | Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTP | X-ray diffraction | 2.9 | 2009-05-12 | ||||
| 121 | 2P5O|1|E+ 2P5O|1|F | Template DNA, Primer DNA | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.8 | 2007-04-03 | ||||
| 122 | 2P5O|1|G+ 2P5O|1|H | Template DNA, Primer DNA | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.8 | 2007-04-03 | ||||
| 123 | 2P5O|1|I+ 2P5O|1|J | Template DNA, Primer DNA | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.8 | 2007-04-03 | ||||
| 124 | 2P5O|1|K+ 2P5O|1|L | Template DNA, Primer DNA | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.8 | 2007-04-03 | ||||
| 125 | 2V9W|1|D+ 2V9W|1|C | 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3' | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-ray diffraction | 3 | 2007-10-30 | ||||
| 126 | 1H0M|1|E+ 1H0M|1|F | 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3' | synthetic construct | Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA | X-ray diffraction | 3 | 2002-08-29 | |||
| 127 | 2V9W|1|F+ 2V9W|1|E | 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3' | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-ray diffraction | 3 | 2007-10-30 | ||||
| 128 | 1H0M|1|G+ 1H0M|1|H | 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3' | synthetic construct | Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA | X-ray diffraction | 3 | 2002-08-29 | |||
| 129 | 3LDS|1|T+ 3LDS|1|P | DNA (5'-D(*CP*AP*(8OG)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(DDG))-3') | Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoG | X-ray diffraction | 3 | 2010-06-02 | ||||
| 130 | 3IN5|1|T+ 3IN5|1|P | DNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3') | Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion | X-ray diffraction | 3.2 | 2009-09-08 | ||||
| 131 | 3IN5|1|U+ 3IN5|1|Q | DNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3') | Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion | X-ray diffraction | 3.2 | 2009-09-08 | ||||
| 132 | 2OH2|1|Q+ 2OH2|1|S | 5'-D(*TP*T*CP*CP*AP*GP*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*G*GP*GP*AP*AP*GP*GP*AP*CP*CP*C)-3' | Ternary Complex of Human DNA Polymerase | X-ray diffraction | 3.05 | 2007-02-27 | ||||
| 133 | 2OH2|1|T+ 2OH2|1|P | 5'-D(*TP*T*CP*CP*AP*GP*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*G*GP*GP*AP*AP*GP*GP*AP*CP*CP*C)-3' | Ternary Complex of Human DNA Polymerase | X-ray diffraction | 3.05 | 2007-02-27 | ||||
| 134 | 1BF5|1|B | DNA (5'-D(*AP*CP*AP*GP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*G P*C)-3') | Homo sapiens | TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX | X-ray diffraction | 2.9 | 1998-08-12 | |||
| 135 | 1BF5|1|C | DNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*AP*CP*GP*GP*GP*AP*AP*AP*CP*T P*G)-3') | TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX | X-ray diffraction | 2.9 | 1998-08-12 | ||||
| 136 | 2C2R|1|T+ 2C2R|1|P | 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3' | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-ray diffraction | 2.55 | 2005-11-29 | ||||
| 137 | 2AYG|1|C+ 2AYG|1|D | 5'-D(*GP*CP*AP*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*TP*TP*GP*C)-3' | Crystal structure of HPV6a E2 DNA binding domain bound to an 18 base pair DNA target | X-ray diffraction | 3.1 | 2006-08-22 | ||||
| 138 | 2W8K|1|T+ 2W8K|1|P | 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3' | Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientation | X-ray diffraction | 3.1 | 2009-01-27 | ||||
| 139 | 2W7O|1|F+ 2W7O|1|E | 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3' | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-ray diffraction | 3.16 | 2009-06-16 | ||||
| 140 | 2W7O|1|T+ 2W7O|1|P | 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3' | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-ray diffraction | 3.16 | 2009-06-16 | ||||
| 141 | 1YNW|1|C+ 1YNW|1|D | 5'-d(*TP*TP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*AP*A)-3', 5'-d(*TP*TP*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*A)-3' | Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element | X-ray diffraction | 3 | 2005-02-15 | ||||
| 142 | 3M9M|1|T+ 3M9M|1|P | DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*G)-3') | Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion | X-ray diffraction | 2.9 | 2010-06-16 | ||||
| 143 | 2O8F|1|F+ 2O8F|1|E | 5'-D(*CP*GP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*CP*CP*GP*TP*C)-3', 5'-D(*GP*AP*CP*GP*GP*CP*CP*GP*CP*CP*GP*CP*TP*AP*GP*CP*G)-3' | human MutSalpha (MSH2/MSH6) bound to DNA with a single base T insert | X-ray diffraction | 3.25 | 2007-06-05 | ||||
| 144 | 2W7P|1|F+ 2W7P|1|E | 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3' | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-ray diffraction | 3.71 | 2009-06-16 | ||||
| 145 | 2W7P|1|T+ 2W7P|1|P | 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3' | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-ray diffraction | 3.71 | 2009-06-16 | ||||
| 146 | 2NLL|1|C+ 2NLL|1|D | DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU)P*CP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*GP*AP*AP*AP*TP*GP*AP*CP*CP*T P*G)-3') | RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA | X-ray diffraction | 1.9 | 1997-03-12 | ||||
| 147 | 3G6P|1|C+ 3G6P|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3') | GR DNA binding domain:FKBP5 complex, 18bp | X-ray diffraction | 1.985 | 2009-04-21 | ||||
| 148 | 1NLW|1|F+ 1NLW|1|G | 5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' | Crystal structure of Mad-Max recognizing DNA | X-ray diffraction | 2 | 2003-02-04 | ||||
| 149 | 1NLW|1|H+ 1NLW|1|J | 5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' | Crystal structure of Mad-Max recognizing DNA | X-ray diffraction | 2 | 2003-02-04 | ||||
| 150 | 1BG1|1|B | DNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3') | TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX | X-ray diffraction | 2.25 | 1999-01-13 | ||||
| 151 | 3G6R|1|C+ 3G6R|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3') | GR DNA binding domain:FKBP5 complex-52, 18bp | X-ray diffraction | 2.3 | 2009-04-21 | ||||
| 152 | 3G9J|1|C+ 3G9J|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*TP*G)-3') | GR DNA binding domain:Pal, 18bp complex-36 | X-ray diffraction | 2.32 | 2009-04-21 | ||||
| 153 | 1HCQ|1|C+ 1HCQ|1|D | DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3') | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-ray diffraction | 2.4 | 1995-11-23 | ||||
| 154 | 1HCQ|1|G+ 1HCQ|1|H | DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3') | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-ray diffraction | 2.4 | 1995-11-23 | ||||
| 155 | 2C7A|1|C+ 2C7A|1|D | 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*TP *TP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP *CP*TP*GP*TP*TP*CP*TP*G)-3' | Homo sapiens | STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX | X-ray diffraction | 2.5 | 2006-08-30 | |||
| 156 | 1DCT|1|F+ 1DCT|1|M | DNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3') | DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNA | X-ray diffraction | 2.8 | 1995-09-15 | ||||
| 157 | 1DCT|1|G+ 1DCT|1|N | DNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3') | DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNA | X-ray diffraction | 2.8 | 1995-09-15 | ||||
| 158 | 1CGP|1|C+ 1CGP|1|E+ 1CGP|1|D+ 1CGP|1|F | DNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*GP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'), DNA (5'-D(*GP*TP*CP*AP*CP*AP*CP*TP*TP*TP*TP*CP*G)-3') | synthetic construct | CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE | X-ray diffraction | 3 | 1994-01-31 | |||
| 159 | 2VAI|1|A | 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*UP*TP *TP*GP*GP*AP*TP*CP*CP*T)-3' | Solution structure of a B-DNA hairpin at high pressure | Solution NMR | 2007-09-11 | |||||
| 160 | 2VAH|1|A | 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*UP*TP *TP*GP*GP*AP*TP*CP*CP*T)-3' | Solution structure of a B-DNA hairpin at low pressure. | Solution NMR | 2007-09-11 | |||||
| 161 | 1ZGW|1|B+ 1ZGW|1|C | 5'-D(*GP*CP*AP*AP*AP*TP*TP*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*A)-3', 5'-D(*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*TP*AP*AP*TP*TP*TP*GP*C)-3' | NMR structure of E. Coli Ada protein in complex with DNA | Solution NMR | 2005-10-18 | |||||
| 162 | 1OSL|1|C+ 1OSL|1|D | 5'-D(*CP*GP*AP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*TP*CP*G)-3' | Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequence | Solution NMR | 2004-05-04 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2V9W|1|D+2V9W|1|C | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-RAY DIFFRACTION | 3 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 2 | 3G6P|1|C+3G6P|1|D | GR DNA binding domain:FKBP5 complex, 18bp | X-RAY DIFFRACTION | 1.985 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 3 | 3OSN|1|B+3OSN|1|C | Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase Iota | X-RAY DIFFRACTION | 1.9 | 18 | enzyme,polymerase,transferase | |
| 4 | 2OZM|1|T+2OZM|1|P | Crystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analog | X-RAY DIFFRACTION | 2.86 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 5 | 3NHG|1|T+3NHG|1|P | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dG | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 6 | 2P5L|1|A+2P5L|1|B | Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator site | X-RAY DIFFRACTION | 2.85 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 7 | 2W8K|1|T+2W8K|1|P | Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientation | X-RAY DIFFRACTION | 3.1 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 8 | 1KB2|1|C+1KB2|1|D | Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response Element | X-RAY DIFFRACTION | 2.7 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 9 | 2VA2|1|F+2VA2|1|E | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 10 | 3L8B|1|C+3L8B|1|D | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-RAY DIFFRACTION | 2.15 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 11 | 2W9C|1|E+2W9C|1|C | Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTP | X-RAY DIFFRACTION | 2.9 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 12 | 1R0N|1|C+1R0N|1|D | Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex | X-RAY DIFFRACTION | 2.6 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 13 | 2C2R|1|T+2C2R|1|P | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-RAY DIFFRACTION | 2.55 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 14 | 2CAX|1|U+2CAX|1|Y | STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATS | X-RAY DIFFRACTION | 2.9 | 18 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 15 | 1CGP|1|C+1CGP|1|E+1CGP|1|D+1CGP|1|F | CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE | X-RAY DIFFRACTION | 3 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 16 | 1Q9X|1|H+1Q9X|1|L | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-RAY DIFFRACTION | 2.69 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 17 | 2W9A|1|T+2W9A|1|P | Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTP | X-RAY DIFFRACTION | 2.6 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 18 | 2DTU|1|K+2DTU|1|L | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 19 | 3EPI|1|B+3EPI|1|C | Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTP | X-RAY DIFFRACTION | 2.9 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 20 | 3NDK|1|T+3NDK|1|P | RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dG | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 21 | 2UVW|1|T+2UVW|1|P | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-RAY DIFFRACTION | 2.09 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 22 | 1S0N|1|T+1S0N|1|P | Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift | X-RAY DIFFRACTION | 2.8 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 23 | 1BF5|1|B | TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX | X-RAY DIFFRACTION | 2.9 | 18 | double helix,structure | DNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription |
| 24 | 3FBD|1|B+3FBD|1|C | Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNA | X-RAY DIFFRACTION | 2.9 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 25 | 3BSE|1|A+3BSE|1|B | Crystal structure analysis of a 16-base-pair B-DNA | X-RAY DIFFRACTION | 1.6 | 18 | B-form double helix,double helix,structure | |
| 26 | 2DY4|1|G+2DY4|1|H | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-RAY DIFFRACTION | 2.65 | 18 | enzyme,polymerase,transferase | |
| 27 | 3NE6|1|T+3NE6|1|P | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dG | X-RAY DIFFRACTION | 2.001 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 28 | 1WBD|1|E+1WBD|1|F | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatch | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
| 29 | 2UVV|1|T+2UVV|1|P | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-RAY DIFFRACTION | 2.2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 30 | 2XCA|1|T+2XCA|1|P | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORM | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 31 | 2NL8|1|W | The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3) | X-RAY DIFFRACTION | 2.3 | 18 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,enzyme,helicase,hydrolase,regulatory |
| 32 | 2OH2|1|T+2OH2|1|P | Ternary Complex of Human DNA Polymerase | X-RAY DIFFRACTION | 3.05 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 33 | 1WBB|1|E+1WBB|1|F | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatch | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
| 34 | 2V4R|1|T+2V4R|1|P | Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 35 | 2DTU|1|G+2DTU|1|H | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 36 | 3DVO|1|E+3DVO|1|F | SgrAI with cognate DNA and calcium bound | X-RAY DIFFRACTION | 1.892 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 37 | 1Q9X|1|F+1Q9X|1|J | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-RAY DIFFRACTION | 2.69 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 38 | 1H0M|1|G+1H0M|1|H | Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA | X-RAY DIFFRACTION | 3 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 39 | 2VAI|1|A | Solution structure of a B-DNA hairpin at high pressure | SOLUTION NMR | 18 | double helix,structure | ||
| 40 | 2V9W|1|F+2V9W|1|E | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-RAY DIFFRACTION | 3 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 41 | 1S9F|1|I+1S9F|1|E | DPO with AT matched | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 42 | 1DCT|1|F+1DCT|1|M | DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNA | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 43 | 1Q9Y|1|T+1Q9Y|1|P | CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 44 | 3DVO|1|G+3DVO|1|H | SgrAI with cognate DNA and calcium bound | X-RAY DIFFRACTION | 1.892 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 45 | 2W9C|1|F+2W9C|1|D | Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTP | X-RAY DIFFRACTION | 2.9 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 46 | 1WB9|1|E+1WB9|1|F | Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatch | X-RAY DIFFRACTION | 2.1 | 18 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
| 47 | 1BF5|1|C | TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX | X-RAY DIFFRACTION | 2.9 | 18 | double helix,structure | DNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription |
| 48 | 3GIL|1|E+3GIL|1|D | Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair | X-RAY DIFFRACTION | 2.71 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 49 | 1NLW|1|F+1NLW|1|G | Crystal structure of Mad-Max recognizing DNA | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription |
| 50 | 2J6T|1|T+2J6T|1|P | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | X-RAY DIFFRACTION | 2.6 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 51 | 3K57|1|T+3K57|1|P | Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex | X-RAY DIFFRACTION | 2.08 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 52 | 1S97|1|L+1S97|1|H | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 53 | 2P5O|1|I+2P5O|1|J | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 54 | 2BQR|1|T+2BQR|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2.37 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 55 | 3LZI|1|T+3LZI|1|P | RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine | X-RAY DIFFRACTION | 2.3 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 56 | 3MKZ|1|Y+3MKZ|1|Z | Structure of SopB(155-272)-18mer complex, P21 form | X-RAY DIFFRACTION | 2.98 | 18 | B-form double helix,double helix,structure | regulatory |
| 57 | 2O8F|1|F+2O8F|1|E | human MutSalpha (MSH2/MSH6) bound to DNA with a single base T insert | X-RAY DIFFRACTION | 3.25 | 18 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 58 | 1S97|1|J+1S97|1|F | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 59 | 3GIJ|1|J+3GIJ|1|H | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 60 | 1R0O|1|C+1R0O|1|D | Crystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex | X-RAY DIFFRACTION | 2.24 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 61 | 1RYS|1|D+1RYS|1|C | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 2.03 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 62 | 2UVU|1|T+2UVU|1|P | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-RAY DIFFRACTION | 2.7 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 63 | 2AYG|1|C+2AYG|1|D | Crystal structure of HPV6a E2 DNA binding domain bound to an 18 base pair DNA target | X-RAY DIFFRACTION | 3.1 | 18 | regulatory,transcription | |
| 64 | 2W7P|1|F+2W7P|1|E | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-RAY DIFFRACTION | 3.71 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 65 | 3MKY|1|T+3MKY|1|U | Structure of SopB(155-323)-18mer DNA complex, I23 form | X-RAY DIFFRACTION | 2.86 | 18 | B-form double helix,double helix,structure | centromere,chromatin,structural |
| 66 | 3MKW|1|T+3MKW|1|U | Structure of sopB(155-272)-18mer complex, I23 form | X-RAY DIFFRACTION | 2.99 | 18 | B-form double helix,double helix,structure | regulatory |
| 67 | 2W9B|1|F+2W9B|1|D | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-RAY DIFFRACTION | 2.28 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 68 | 3PR4|1|T | Dpo4 Y12A mutant incorporating dADP opposite template dT | X-RAY DIFFRACTION | 2.65 | 22 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 69 | 1S97|1|K+1S97|1|G | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 70 | 2JEJ|1|T+2JEJ|1|P | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 1.86 | 18 | enzyme,polymerase,transferase | |
| 71 | 2W9B|1|E+2W9B|1|C | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-RAY DIFFRACTION | 2.28 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 72 | 3K5L|1|T+3K5L|1|P | Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complex | X-RAY DIFFRACTION | 2.7 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 73 | 3GIL|1|J+3GIL|1|H | Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair | X-RAY DIFFRACTION | 2.71 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 74 | 2BQU|1|T+2BQU|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 75 | 1S9F|1|L+1S9F|1|H | DPO with AT matched | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 76 | 1S9F|1|K+1S9F|1|G | DPO with AT matched | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 77 | 3M9N|1|T+3M9N|1|P | Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion | X-RAY DIFFRACTION | 1.93 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 78 | 3LZJ|1|T+3LZJ|1|P | RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine | X-RAY DIFFRACTION | 2.05 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 79 | 2VAH|1|A | Solution structure of a B-DNA hairpin at low pressure. | SOLUTION NMR | 18 | B-form double helix,double helix,structure | ||
| 80 | 2C28|1|T+2C28|1|P | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-RAY DIFFRACTION | 2.27 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 81 | 3GIM|1|E+3GIM|1|D | Dpo4 extension ternary complex with oxoG(anti)-G(syn) pair | X-RAY DIFFRACTION | 2.7 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 82 | 2J6U|1|T+2J6U|1|P | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP. | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 83 | 3L8B|1|E+3L8B|1|F | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-RAY DIFFRACTION | 2.15 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 84 | 2JEI|1|T+2JEI|1|P | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 2.39 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 85 | 1Q9X|1|E+1Q9X|1|I | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-RAY DIFFRACTION | 2.69 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 86 | 2J6S|1|T+2J6S|1|P | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 87 | 2W8L|1|T+2W8L|1|P | Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientation | X-RAY DIFFRACTION | 3 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 88 | 1S9F|1|J+1S9F|1|F | DPO with AT matched | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 89 | 2W7O|1|F+2W7O|1|E | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-RAY DIFFRACTION | 3.16 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 90 | 3NGI|1|T+3NGI|1|P | RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dG | X-RAY DIFFRACTION | 1.886 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 91 | 2C22|1|T+2C22|1|P | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-RAY DIFFRACTION | 2.56 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 92 | 2JEG|1|T+2JEG|1|P | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 2.38 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 93 | 1KB4|1|C+1KB4|1|D | Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response Element | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 94 | 1HCQ|1|G+1HCQ|1|H | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 95 | 3PR5|1|T | Dpo4 Y12A mutant incorporating ADP opposite template dT | X-RAY DIFFRACTION | 2.4 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 96 | 1RYS|1|F+1RYS|1|E | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 2.03 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 97 | 3NAE|1|T+3NAE|1|P | RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin | X-RAY DIFFRACTION | 2.003 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 98 | 2BNZ|1|E+2BNZ|1|F | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeats | X-RAY DIFFRACTION | 2.6 | 18 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 99 | 3NGD|1|C+3NGD|1|D | Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase Iota | X-RAY DIFFRACTION | 2.8 | 18 | enzyme,polymerase,transferase | |
| 100 | 2UVR|1|T+2UVR|1|P | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-RAY DIFFRACTION | 2.9 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 101 | 2DTU|1|I+2DTU|1|J | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 102 | 2P5L|1|E+2P5L|1|F | Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator site | X-RAY DIFFRACTION | 2.85 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 103 | 2BNW|1|G+2BNW|1|H | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-RAY DIFFRACTION | 2.45 | 18 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 104 | 3NCI|1|T+3NCI|1|P | RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolution | X-RAY DIFFRACTION | 1.79 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 105 | 3CFR|1|T+3CFR|1|P | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2 | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 106 | 2OH2|1|Q+2OH2|1|S | Ternary Complex of Human DNA Polymerase | X-RAY DIFFRACTION | 3.05 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 107 | 1S97|1|I+1S97|1|E | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 108 | 2JEF|1|T+2JEF|1|P | The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 2.17 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 109 | 2C7A|1|C+2C7A|1|D | STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 110 | 3IN5|1|U+3IN5|1|Q | Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion | X-RAY DIFFRACTION | 3.2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 111 | 2XCP|1|F+2XCP|1|E | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORM | X-RAY DIFFRACTION | 2.6 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 112 | 1Q9X|1|G+1Q9X|1|K | Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA | X-RAY DIFFRACTION | 2.69 | 18 | double helix,structure | enzyme,polymerase,transferase |
| 113 | 3MKZ|1|C+3MKZ|1|D | Structure of SopB(155-272)-18mer complex, P21 form | X-RAY DIFFRACTION | 2.98 | 18 | B-form double helix,double helix,structure | regulatory |
| 114 | 1ZGW|1|B+1ZGW|1|C | NMR structure of E. Coli Ada protein in complex with DNA | SOLUTION NMR | 18 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription | |
| 115 | 2W7N|1|E+2W7N|1|F+2W7N|1|G+2W7N|1|H | Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene Regulation | X-RAY DIFFRACTION | 1.85 | 18 | B-form double helix,double helix,structure | regulatory,transcription |
| 116 | 2DTU|1|E+2DTU|1|F | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 117 | 1P8K|1|A+1P8K|1|C+1P8K|1|D+1P8K|1|B | The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factor | X-RAY DIFFRACTION | 2.6 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 118 | 3FBD|1|E+3FBD|1|F | Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNA | X-RAY DIFFRACTION | 2.9 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 119 | 3GIK|1|E+3GIK|1|D | Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pair | X-RAY DIFFRACTION | 2.9 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 120 | 2XC9|1|T+2XC9|1|P | BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORM | X-RAY DIFFRACTION | 2.2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 121 | 2VA2|1|D+2VA2|1|C | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 122 | 2IVH|1|B+2IVH|1|C | Crystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNA | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 123 | 2VA3|1|T+2VA3|1|P | Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand | X-RAY DIFFRACTION | 2.98 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 124 | 3GIJ|1|E+3GIJ|1|D | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 125 | 2DY4|1|E+2DY4|1|F | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-RAY DIFFRACTION | 2.65 | 18 | enzyme,polymerase,transferase | |
| 126 | 1KB6|1|C+1KB6|1|D | Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element | X-RAY DIFFRACTION | 2.7 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 127 | 1R4I|1|C+1R4I|1|D | Crystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response Element | X-RAY DIFFRACTION | 3.1 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 128 | 2P5O|1|E+2P5O|1|F | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 129 | 2C2D|1|T+2C2D|1|P | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-RAY DIFFRACTION | 2.57 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 130 | 1NLW|1|H+1NLW|1|J | Crystal structure of Mad-Max recognizing DNA | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription |
| 131 | 1IG9|1|T+1IG9|1|P | Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase | X-RAY DIFFRACTION | 2.6 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 132 | 2BR0|1|T+2BR0|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2.17 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 133 | 1B3T|1|C+1B3T|1|D | EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX | X-RAY DIFFRACTION | 2.2 | 18 | B-form double helix,double helix,structure | regulatory,transcription |
| 134 | 3CFP|1|T+3CFP|1|P | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1 | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 135 | 3EPG|1|B+3EPG|1|C | Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine | X-RAY DIFFRACTION | 2.5 | 18 | enzyme,polymerase,transferase | |
| 136 | 1DCT|1|G+1DCT|1|N | DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNA | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 137 | 2BQ3|1|T+2BQ3|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 138 | 1JX4|1|T+1JX4|1|P | Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-RAY DIFFRACTION | 1.7 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 139 | 3LDS|1|T+3LDS|1|P | Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoG | X-RAY DIFFRACTION | 3 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 140 | 3CQ8|1|T+3CQ8|1|P | Ternary complex of the L415F mutant RB69 exo(-)polymerase | X-RAY DIFFRACTION | 2.5 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 141 | 3IN5|1|T+3IN5|1|P | Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion | X-RAY DIFFRACTION | 3.2 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 142 | 3M9M|1|T+3M9M|1|P | Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion | X-RAY DIFFRACTION | 2.9 | 18 | enzyme,polymerase,transferase | |
| 143 | 2OZS|1|T+2OZS|1|P | Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMP | X-RAY DIFFRACTION | 2.75 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 144 | 1YNW|1|C+1YNW|1|D | Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element | X-RAY DIFFRACTION | 3 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 145 | 2DY4|1|I+2DY4|1|J | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-RAY DIFFRACTION | 2.65 | 18 | enzyme,polymerase,transferase | |
| 146 | 2OG0|1|C+2OG0|1|D | Crystal Structure of the Lambda Xis-DNA complex | X-RAY DIFFRACTION | 1.9 | 18 | B-form double helix,double helix,structure | enzyme,recombinase |
| 147 | 1H0M|1|E+1H0M|1|F | Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA | X-RAY DIFFRACTION | 3 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 148 | 1BG1|1|B | TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX | X-RAY DIFFRACTION | 2.25 | 18 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription |
| 149 | 2W7P|1|T+2W7P|1|P | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-RAY DIFFRACTION | 3.71 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 150 | 3DW9|1|E+3DW9|1|F | SgrAI with cognate DNA and manganese bound | X-RAY DIFFRACTION | 2.2 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 151 | 2F8X|1|X+2F8X|1|Y | Crystal structure of activated Notch, CSL and MAML on HES-1 promoter DNA sequence | X-RAY DIFFRACTION | 3.25 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
| 152 | 1OSL|1|C+1OSL|1|D | Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequence | SOLUTION NMR | 18 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 153 | 2P5O|1|G+2P5O|1|H | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 154 | 2NLL|1|C+2NLL|1|D | RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA | X-RAY DIFFRACTION | 1.9 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 155 | 2DY4|1|K+2DY4|1|L | Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol | X-RAY DIFFRACTION | 2.65 | 18 | enzyme,polymerase,transferase | |
| 156 | 2BNW|1|E+2BNW|1|F | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-RAY DIFFRACTION | 2.45 | 18 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 157 | 2XCP|1|T+2XCP|1|P | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORM | X-RAY DIFFRACTION | 2.6 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 158 | 3G9J|1|C+3G9J|1|D | GR DNA binding domain:Pal, 18bp complex-36 | X-RAY DIFFRACTION | 2.32 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 159 | 3G6R|1|C+3G6R|1|D | GR DNA binding domain:FKBP5 complex-52, 18bp | X-RAY DIFFRACTION | 2.3 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 160 | 2P5O|1|K+2P5O|1|L | Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.8 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 161 | 1HCQ|1|C+1HCQ|1|D | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-RAY DIFFRACTION | 2.4 | 18 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 162 | 2W7O|1|T+2W7O|1|P | Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct | X-RAY DIFFRACTION | 3.16 | 18 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
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