Equivalence class DNA_all_20696.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3FL6|1|A+ 3FL6|1|B (rep) | 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', 5'-D(*CP*GP*CP*AP*CP*GP*C)-3' | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-ray diffraction | 1.17 | 2009-12-29 | ||||
| 2 | 3FL6|1|C+ 3FL6|1|D | 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', 5'-D(*CP*GP*CP*AP*CP*GP*C)-3' | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-ray diffraction | 1.17 | 2009-12-29 | ||||
| 3 | 1M6R|1|A+ 1M6R|1|B | 5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3' | Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang | X-ray diffraction | 1.54 | 2003-02-25 | ||||
| 4 | 3EYI|1|C+ 3EYI|1|D | 5'-TCGCGCG-3' | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-ray diffraction | 1.45 | 2009-01-13 | ||||
| 5 | 1MF5|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT Quadruplex | X-ray diffraction | 1.1 | 2003-02-11 | ||||
| 6 | 1MF5|1|B | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT Quadruplex | X-ray diffraction | 1.1 | 2003-02-11 | ||||
| 7 | 1UB8|1|A+ 1UB8|1|B | 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-ray diffraction | 1.6 | 2004-03-09 | ||||
| 8 | 1UB8|1|C+ 1UB8|1|D | 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-ray diffraction | 1.6 | 2004-03-09 | ||||
| 9 | 1UB8|1|E+ 1UB8|1|F | 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-ray diffraction | 1.6 | 2004-03-09 | ||||
| 10 | 2Z70|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DTP*DCP*DGP*DCP*DG)-3') | E.coli RNase 1 in complex with d(CGCGATCGCG) | X-ray diffraction | 1.7 | 2008-06-24 | ||||
| 11 | 2AXY|1|E | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 2005-09-27 | ||||
| 12 | 2AXY|1|F | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 2005-09-27 | ||||
| 13 | 2AXY|1|G | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 2005-09-27 | ||||
| 14 | 2AXY|1|H | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 2005-09-27 | ||||
| 15 | 2PY5|1|D | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 2007-07-17 | ||||
| 16 | 2PY5|1|E | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 2007-07-17 | ||||
| 17 | 2PY5|1|J+ 2PY5|1|Y | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 2007-07-17 | ||||
| 18 | 2PY5|1|L | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 2007-07-17 | ||||
| 19 | 2P2R|1|B | C-rich strand of human telomeric DNA | Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA | X-ray diffraction | 1.6 | 2007-06-12 | ||||
| 20 | 2WBS|1|F+ 2WBS|1|G | 5'-D(*GP*AP*GP*GP*CP*GP*CP)-3', 5'-D(*GP*CP*GP*CP*CP*TP*CP)-3' | Mus musculus | Crystal structure of the zinc finger domain of Klf4 bound to its target DNA | X-ray diffraction | 1.7 | 2010-04-07 | |||
| 21 | 2KFZ|1|B | 5'-D(*GP*CP*TP*TP*AP*(US1)P*G)-3' | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY | X-ray diffraction | 2.03 | 1998-11-11 | ||||
| 22 | 3Q8P|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dCTP opposite 8-oxo-guanine | X-ray diffraction | 1.95 | 2011-02-23 | |||
| 23 | 2KFN|1|B | 5'-D(*GP*CP*TP*TP*AP*(US1)P*G)-3' | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE | X-ray diffraction | 2.03 | 1998-11-11 | ||||
| 24 | 3Q8Q|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine | X-ray diffraction | 2.031 | 2011-02-23 | |||
| 25 | 1S9B|1|A+ 1S9B|1|B | 5'-D(*GP*AP*AP*TP*TP*CP*G)-3' | Crystal Structure Analysis of the B-DNA GAATTCG | X-ray diffraction | 2.81 | 2004-09-07 | ||||
| 26 | 2QHB|1|C+ 2QHB|1|D | 5'-D(P*TP*TP*TP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*AP*AP*A)-3' | synthetic construct | Crystal structure of NgTRF complexed with telomeric DNA | X-ray diffraction | 2.4 | 2008-07-15 | |||
| 27 | 2QHB|1|E+ 2QHB|1|F | 5'-D(P*TP*TP*TP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*AP*AP*A)-3' | synthetic construct | Crystal structure of NgTRF complexed with telomeric DNA | X-ray diffraction | 2.4 | 2008-07-15 | |||
| 28 | 3Q8S|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine | X-ray diffraction | 2.09 | 2011-02-23 | |||
| 29 | 1SFU|1|C+ 1SFU|1|D | 5'-D(*T*CP*GP*CP*GP*CP*G)-3' | Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA | X-ray diffraction | 2 | 2004-08-17 | ||||
| 30 | 2KZZ|1|B | DNA (5'-D(*GP*CP*TP*T*AP*CP*G)-3') | KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY | X-ray diffraction | 2.25 | 1999-12-14 | ||||
| 31 | 3E44|1|E+ 3E44|1|H | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DT)-3', 5'-D(P*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-ray diffraction | 2.52 | 2008-08-26 | ||||
| 32 | 3E44|1|F+ 3E44|1|G | 5'-D(P*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3', 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DT)-3' | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-ray diffraction | 2.52 | 2008-08-26 | ||||
| 33 | 1R2O|1|X | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | d(GCATGCT) + Ni2+ | X-ray diffraction | 2.38 | 2003-10-21 | ||||
| 34 | 2HEO|1|B+ 2HEO|1|E | 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' | General Structure-Based Approach to the Design of Protein Ligands: Application to the Design of Kv1.2 Potassium Channel Blockers. | X-ray diffraction | 1.7 | 2006-11-21 | ||||
| 35 | 3Q8R|1|P | DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3') | synthetic construct | Human DNA polymerase iota incorporating dGTP opposite 8-oxo-guanine | X-ray diffraction | 2.45 | 2011-02-23 | |||
| 36 | 3F22|1|D+ 3F22|1|E | DNA (5'-D(*DTP*DCP*DGP*DTP*DAP*DCP*DG)-3') | Crystal structure of Zalpha in complex with d(CGTACG) | X-ray diffraction | 2.5 | 2008-12-30 | ||||
| 37 | 3F22|1|F | DNA (5'-D(*DTP*DCP*DGP*DTP*DAP*DCP*DG)-3') | Crystal structure of Zalpha in complex with d(CGTACG) | X-ray diffraction | 2.5 | 2008-12-30 | ||||
| 38 | 1J75|1|B | 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' | Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA | X-ray diffraction | 1.85 | 2001-09-01 | ||||
| 39 | 3F21|1|D+ 3F21|1|E | DNA (5'-D(*DTP*DCP*DAP*DCP*DGP*DTP*DG)-3') | Crystal structure of Zalpha in complex with d(CACGTG) | X-ray diffraction | 2.2 | 2008-12-30 | ||||
| 40 | 3F21|1|F | DNA (5'-D(*DTP*DCP*DAP*DCP*DGP*DTP*DG)-3') | Crystal structure of Zalpha in complex with d(CACGTG) | X-ray diffraction | 2.2 | 2008-12-30 | ||||
| 41 | 3F23|1|D+ 3F23|1|E | DNA (5'-D(*DTP*DCP*DGP*DGP*DCP*DCP*DG)-3') | Crystal structure of Zalpha in complex with d(CGGCCG) | X-ray diffraction | 2.7 | 2008-12-30 | ||||
| 42 | 3F23|1|F | DNA (5'-D(*DTP*DCP*DGP*DGP*DCP*DCP*DG)-3') | Crystal structure of Zalpha in complex with d(CGGCCG) | X-ray diffraction | 2.7 | 2008-12-30 | ||||
| 43 | 1QZL|1|X | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Cobalt | X-ray diffraction | 2.85 | 2003-10-21 | ||||
| 44 | 1QYL|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Vanadium | X-ray diffraction | 1 | 2003-10-21 | ||||
| 45 | 1QYK|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Barium | X-ray diffraction | 1.4 | 2003-10-21 | ||||
| 46 | 1QYK|1|B | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Barium | X-ray diffraction | 1.4 | 2003-10-21 | ||||
| 47 | 1FIU|1|I+ 1FIU|1|J+ 1FIU|1|E+ 1FIU|1|F | DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*G)-3') | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-ray diffraction | 1.6 | 2001-02-07 | ||||
| 48 | 1FIU|1|K+ 1FIU|1|L+ 1FIU|1|G+ 1FIU|1|H | DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*G)-3') | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-ray diffraction | 1.6 | 2001-02-07 | ||||
| 49 | 331D|1|A+ 331D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF D(GCGCGCG) WITH 5'-OVERHANG G'S | X-ray diffraction | 1.65 | 1997-09-24 | ||||
| 50 | 313D|1|A+ 313D|1|B | DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR | X-ray diffraction | 1.68 | 1997-08-05 | ||||
| 51 | 1PUP|1|A | PNA (H-P(*CPN*GPN*TPN*APN*CPN*GPN)-NH2) | CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION | X-ray diffraction | 1.7 | 1997-02-25 | ||||
| 52 | 1PUP|1|B | PNA (H-P(*CPN*GPN*TPN*APN*CPN*GPN)-NH2) | CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION | X-ray diffraction | 1.7 | 1997-02-25 | ||||
| 53 | 312D|1|A+ 312D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*CP*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WATSON-CRICK BASE PAIR | X-ray diffraction | 1.8 | 1997-08-28 | ||||
| 54 | 314D|1|A+ 314D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WOBBLE BASE PAIR | X-ray diffraction | 1.9 | 1997-08-05 | ||||
| 55 | 1QBJ|1|D+ 1QBJ|1|E | DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-ray diffraction | 2.1 | 1999-07-02 | ||||
| 56 | 1QBJ|1|F | DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-ray diffraction | 2.1 | 1999-07-02 | ||||
| 57 | 1XHV|1|E+ 1XHV|1|I+ 1XHV|1|H+ 1XHV|1|L | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 2004-09-28 | ||||
| 58 | 1XHV|1|G+ 1XHV|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 2004-09-28 | ||||
| 59 | 1XHV|1|K+ 1XHV|1|J | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 2004-09-28 | ||||
| 60 | 9ICW|1|T+ 9ICW|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE | X-ray diffraction | 2.6 | 1996-11-15 | ||||
| 61 | 9ICK|1|T+ 9ICK|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR | X-ray diffraction | 2.7 | 1996-11-15 | ||||
| 62 | 7ICE|1|T+ 7ICE|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(P*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 63 | 9ICL|1|T+ 9ICL|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 64 | 7ICS|1|T+ 7ICS|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 2.8 | 1996-04-19 | ||||
| 65 | 7ICI|1|T+ 7ICI|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 66 | 7ICV|1|T+ 7ICV|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 67 | 7ICT|1|T+ 7ICT|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 | X-ray diffraction | 2.8 | 1996-11-15 | ||||
| 68 | 7ICN|1|T+ 7ICN|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 | X-ray diffraction | 2.8 | 1996-04-19 | ||||
| 69 | 2BZF|1|B+ 2BZF|1|C | 5'-D(*GP*TP*GP*GP*AP*GP*GP)-3', 5'-D(*CP*CP*TP*CP*CP*AP*CP)-3' | Structural basis for DNA bridging by barrier-to-autointegration factor (BAF) | X-ray diffraction | 2.87 | 2005-09-15 | ||||
| 70 | 9ICM|1|T+ 9ICM|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 71 | 7ICH|1|T+ 7ICH|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2 | X-ray diffraction | 2.9 | 1996-04-19 | ||||
| 72 | 7ICQ|1|T+ 7ICQ|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 2.9 | 1996-04-19 | ||||
| 73 | 9ICS|1|T+ 9ICS|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 74 | 9ICQ|1|T+ 9ICQ|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 75 | 9ICU|1|T+ 9ICU|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-ray diffraction | 2.9 | 1996-11-15 | ||||
| 76 | 7ICK|1|T+ 7ICK|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2 | X-ray diffraction | 2.9 | 1996-04-19 | ||||
| 77 | 9ICO|1|T+ 9ICO|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 | X-ray diffraction | 2.9 | 1995-12-16 | ||||
| 78 | 1XHU|1|E+ 1XHU|1|I+ 1XHU|1|H+ 1XHU|1|L | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 2004-09-28 | ||||
| 79 | 1XHU|1|G+ 1XHU|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 2004-09-28 | ||||
| 80 | 1XHU|1|K+ 1XHU|1|J | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 2004-09-28 | ||||
| 81 | 3LLN|1|A+ 3LLN|1|B | DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3') | Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC). | X-ray diffraction | 3 | 2010-08-18 | ||||
| 82 | 9ICY|1|P+ 9ICY|1|T | DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*GP*A)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) | X-ray diffraction | 3 | 1996-11-15 | ||||
| 83 | 9ICT|1|T+ 9ICT|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 | X-ray diffraction | 3 | 1996-11-15 | ||||
| 84 | 9ICR|1|T+ 9ICR|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 | X-ray diffraction | 3 | 1996-01-04 | ||||
| 85 | 7ICM|1|T+ 7ICM|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) | X-ray diffraction | 3 | 1996-11-15 | ||||
| 86 | 7ICR|1|T+ 7ICR|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 3 | 1996-11-15 | ||||
| 87 | 9ICN|1|T+ 9ICN|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 | X-ray diffraction | 3 | 1995-12-16 | ||||
| 88 | 7ICG|1|T+ 7ICG|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2 | X-ray diffraction | 3 | 1996-04-19 | ||||
| 89 | 7ICP|1|T+ 7ICP|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) | X-ray diffraction | 3 | 1996-11-15 | ||||
| 90 | 7ICF|1|T+ 7ICF|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) | X-ray diffraction | 3.1 | 1996-11-15 | ||||
| 91 | 7ICL|1|T+ 7ICL|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) | X-ray diffraction | 3.1 | 1996-11-15 | ||||
| 92 | 9ICP|1|T+ 9ICP|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) | X-ray diffraction | 3.1 | 1996-11-15 | ||||
| 93 | 7ICO|1|T+ 7ICO|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 3.3 | 1996-04-19 | ||||
| 94 | 7ICU|1|T+ 7ICU|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) | X-ray diffraction | 3.3 | 1996-11-15 | ||||
| 95 | 2JWQ|1|A | DNA (5'-D(*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3') | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | Solution NMR | 2008-03-25 | |||||
| 96 | 1U01|1|A+ 1U01|1|B | 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', 5'-D(*CP*GP*CP*AP*CP*GP*C)-3' | High resolution NMR structure of 5-d(GCGT*GCG)-3/5-d(CGCACGC)-3 (T*represents a cyclohexenyl nucleotide) | Solution NMR | 2005-05-31 | |||||
| 97 | 1Q2T|1|A | 5'-D(*(MCY)P*CP*TP*CP*TP*CP*C)-3' | Solution structure of d(5mCCTCTCC)4 | Solution NMR | 2003-09-23 | |||||
| 98 | 1X6W|1|A+ 1X6W|1|B | 5'-D(*(TMS)P*TP*GP*CP*GP*CP*A)-3' | Solution Structure of the DNA Duplex TGCGCA:TGCGCA Capped by Trimethoxystilbene Residues | Solution NMR | 2004-10-05 | |||||
| 99 | 2JWQ|1|B | DNA (5'-D(*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3') | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | Solution NMR | 2008-03-25 | |||||
| 100 | 1Q2T|1|B | 5'-D(*(MCY)P*CP*TP*CP*TP*CP*C)-3' | Solution structure of d(5mCCTCTCC)4 | Solution NMR | 2003-09-23 | |||||
| 101 | 1Q2T|1|C | 5'-D(*(MCY)P*CP*TP*CP*TP*CP*C)-3' | Solution structure of d(5mCCTCTCC)4 | Solution NMR | 2003-09-23 | |||||
| 102 | 2JWQ|1|C | DNA (5'-D(*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3') | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | Solution NMR | 2008-03-25 | |||||
| 103 | 2JWQ|1|D | DNA (5'-D(*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3') | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | Solution NMR | 2008-03-25 | |||||
| 104 | 1Q2T|1|D | 5'-D(*(MCY)P*CP*TP*CP*TP*CP*C)-3' | Solution structure of d(5mCCTCTCC)4 | Solution NMR | 2003-09-23 | |||||
| 105 | 1NP9|1|D | 5'-D(*TP*TP*AP*GP*GP*GP*T)-3' | Structure of the parallel-stranded DNA quadruplex d(TTAGGGA)4 containing the human telomeric repeat | Solution NMR | 2003-09-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1J75|1|B | Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA | X-RAY DIFFRACTION | 1.85 | 7 | Z-form double helix,double helix,structure | cell cycle,regulatory |
| 2 | 1QBJ|1|D+1QBJ|1|E | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 3 | 1QBJ|1|F | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 4 | 3FL6|1|A+3FL6|1|B | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-RAY DIFFRACTION | 1.17 | 7 | B-form double helix,double helix,structure | |
| 5 | 3F22|1|F | Crystal structure of Zalpha in complex with d(CGTACG) | X-RAY DIFFRACTION | 2.5 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 6 | 3F23|1|D+3F23|1|E | Crystal structure of Zalpha in complex with d(CGGCCG) | X-RAY DIFFRACTION | 2.7 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 7 | 1R2O|1|X | d(GCATGCT) + Ni2+ | X-RAY DIFFRACTION | 2.38 | 7 | quadruplex,structure | |
| 8 | 3EYI|1|C+3EYI|1|D | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-RAY DIFFRACTION | 1.45 | 7 | Z-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 9 | 3F21|1|D+3F21|1|E | Crystal structure of Zalpha in complex with d(CACGTG) | X-RAY DIFFRACTION | 2.2 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 10 | 2HEO|1|B+2HEO|1|E | General Structure-Based Approach to the Design of Protein Ligands: Application to the Design of Kv1.2 Potassium Channel Blockers. | X-RAY DIFFRACTION | 1.7 | 7 | Z-form double helix,double helix,structure | cell cycle,regulatory |
| 11 | 3F21|1|F | Crystal structure of Zalpha in complex with d(CACGTG) | X-RAY DIFFRACTION | 2.2 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 12 | 313D|1|A+313D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR | X-RAY DIFFRACTION | 1.68 | 7 | Z-form double helix,double helix,structure | |
| 13 | 312D|1|A+312D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WATSON-CRICK BASE PAIR | X-RAY DIFFRACTION | 1.8 | 7 | Z-form double helix,double helix,structure | |
| 14 | 1M6R|1|A+1M6R|1|B | Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang | X-RAY DIFFRACTION | 1.54 | 7 | Z-form double helix,double helix,structure | |
| 15 | 1SFU|1|C+1SFU|1|D | Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA | X-RAY DIFFRACTION | 2 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 16 | 3F22|1|D+3F22|1|E | Crystal structure of Zalpha in complex with d(CGTACG) | X-RAY DIFFRACTION | 2.5 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 17 | 314D|1|A+314D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WOBBLE BASE PAIR | X-RAY DIFFRACTION | 1.9 | 7 | Z-form double helix,double helix,structure | |
| 18 | 331D|1|A+331D|1|B | CRYSTAL STRUCTURE OF D(GCGCGCG) WITH 5'-OVERHANG G'S | X-RAY DIFFRACTION | 1.65 | 7 | Z-form double helix,double helix,structure | |
| 19 | 2P2R|1|B | Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.6 | 7 | post-transcriptional,regulatory | |
| 20 | 2PY5|1|J+2PY5|1|Y | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,polymerase,transferase | |
| 21 | 3FL6|1|C+3FL6|1|D | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-RAY DIFFRACTION | 1.17 | 7 | B-form double helix,double helix,structure | |
| 22 | 1Q2T|1|A | Solution structure of d(5mCCTCTCC)4 | SOLUTION NMR | 7 | I-motif,parallel helix,structure | ||
| 23 | 1Q2T|1|C | Solution structure of d(5mCCTCTCC)4 | SOLUTION NMR | 7 | I-motif,parallel helix,structure | ||
| 24 | 2PY5|1|L | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,polymerase,transferase | |
| 25 | 1XHU|1|E+1XHU|1|I+1XHU|1|H+1XHU|1|L | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 7 | enzyme,hydrolase,nuclease | |
| 26 | 1XHV|1|E+1XHV|1|I+1XHV|1|H+1XHV|1|L | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 7 | enzyme,hydrolase,nuclease | |
| 27 | 3E44|1|E+3E44|1|H | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-RAY DIFFRACTION | 2.52 | 7 | double helix,structure | enzyme,hydrolase,nuclease |
| 28 | 1XHU|1|G+1XHU|1|F | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 7 | enzyme,hydrolase,nuclease | |
| 29 | 1XHV|1|G+1XHV|1|F | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 7 | enzyme,hydrolase,nuclease | |
| 30 | 1XHV|1|K+1XHV|1|J | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 7 | enzyme,hydrolase,nuclease | |
| 31 | 1XHU|1|K+1XHU|1|J | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 7 | enzyme,hydrolase,nuclease | |
| 32 | 2JWQ|1|C | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | SOLUTION NMR | 7 | quadruplex,structure | ||
| 33 | 2JWQ|1|A | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | SOLUTION NMR | 7 | quadruplex,structure | ||
| 34 | 2JWQ|1|B | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | SOLUTION NMR | 7 | quadruplex,structure | ||
| 35 | 2JWQ|1|D | G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study | SOLUTION NMR | 7 | quadruplex,structure | ||
| 36 | 3E44|1|F+3E44|1|G | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-RAY DIFFRACTION | 2.52 | 7 | double helix,structure | enzyme,hydrolase,nuclease |
| 37 | 1NP9|1|D | Structure of the parallel-stranded DNA quadruplex d(TTAGGGA)4 containing the human telomeric repeat | SOLUTION NMR | 7 | quadruplex,structure | ||
| 38 | 1FIU|1|K+1FIU|1|L+1FIU|1|G+1FIU|1|H | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,hydrolase,nuclease | |
| 39 | 1FIU|1|I+1FIU|1|J+1FIU|1|E+1FIU|1|F | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,hydrolase,nuclease | |
| 40 | 3LLN|1|A+3LLN|1|B | Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC). | X-RAY DIFFRACTION | 3 | 7 | double helix,structure | |
| 41 | 2QHB|1|C+2QHB|1|D | Crystal structure of NgTRF complexed with telomeric DNA | X-RAY DIFFRACTION | 2.4 | 7 | B-form double helix,double helix,structure | chromatin,structural,telomere |
| 42 | 2QHB|1|E+2QHB|1|F | Crystal structure of NgTRF complexed with telomeric DNA | X-RAY DIFFRACTION | 2.4 | 7 | B-form double helix,double helix,structure | chromatin,structural,telomere |
| 43 | 7ICR|1|T+7ICR|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 44 | 7ICL|1|T+7ICL|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 3.1 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 45 | 7ICO|1|T+7ICO|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 3.3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 46 | 7ICF|1|T+7ICF|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) | X-RAY DIFFRACTION | 3.1 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 47 | 7ICU|1|T+7ICU|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 3.3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 48 | 7ICS|1|T+7ICS|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 49 | 7ICK|1|T+7ICK|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 50 | 9ICK|1|T+9ICK|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR | X-RAY DIFFRACTION | 2.7 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 51 | 7ICT|1|T+7ICT|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 52 | 9ICQ|1|T+9ICQ|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 53 | 9ICO|1|T+9ICO|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 54 | 7ICM|1|T+7ICM|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 55 | 7ICN|1|T+7ICN|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 56 | 7ICG|1|T+7ICG|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 57 | 9ICM|1|T+9ICM|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 58 | 9ICU|1|T+9ICU|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 59 | 9ICW|1|T+9ICW|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE | X-RAY DIFFRACTION | 2.6 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 60 | 9ICR|1|T+9ICR|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 61 | 9ICT|1|T+9ICT|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 62 | 7ICQ|1|T+7ICQ|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 63 | 7ICP|1|T+7ICP|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 64 | 7ICE|1|T+7ICE|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 65 | 7ICI|1|T+7ICI|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 66 | 7ICH|1|T+7ICH|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 67 | 7ICV|1|T+7ICV|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 68 | 9ICN|1|T+9ICN|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 69 | 9ICS|1|T+9ICS|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 | X-RAY DIFFRACTION | 2.9 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 70 | 9ICL|1|T+9ICL|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 | X-RAY DIFFRACTION | 2.8 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 71 | 1S9B|1|A+1S9B|1|B | Crystal Structure Analysis of the B-DNA GAATTCG | X-RAY DIFFRACTION | 2.81 | 7 | B-form double helix,double helix,structure | |
| 72 | 9ICP|1|T+9ICP|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 3.1 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 73 | 9ICY|1|P+9ICY|1|T | DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) | X-RAY DIFFRACTION | 3 | 7 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 74 | 2WBS|1|F+2WBS|1|G | Crystal structure of the zinc finger domain of Klf4 bound to its target DNA | X-RAY DIFFRACTION | 1.7 | 7 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 75 | 3Q8R|1|P | Human DNA polymerase iota incorporating dGTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.45 | 21 | double helix,structure | enzyme,polymerase,transferase |
| 76 | 3Q8Q|1|P | Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.031 | 17 | double helix,structure | enzyme,polymerase,transferase |
| 77 | 3Q8P|1|P | Human DNA polymerase iota incorporating dCTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 1.95 | 18 | enzyme,polymerase,transferase | |
| 78 | 3Q8S|1|P | Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine | X-RAY DIFFRACTION | 2.09 | 19 | enzyme,polymerase,transferase | |
| 79 | 1X6W|1|A+1X6W|1|B | Solution Structure of the DNA Duplex TGCGCA:TGCGCA Capped by Trimethoxystilbene Residues | SOLUTION NMR | 7 | double helix,structure | ||
| 80 | 1U01|1|A+1U01|1|B | High resolution NMR structure of 5-d(GCGT*GCG)-3/5-d(CGCACGC)-3 (T*represents a cyclohexenyl nucleotide) | SOLUTION NMR | 7 | B-form double helix,double helix,structure | ||
| 81 | 1UB8|1|C+1UB8|1|D | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-RAY DIFFRACTION | 1.6 | 7 | double helix,feature,mispair,structure | |
| 82 | 1UB8|1|E+1UB8|1|F | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-RAY DIFFRACTION | 1.6 | 7 | double helix,feature,mispair,structure | |
| 83 | 1UB8|1|A+1UB8|1|B | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-RAY DIFFRACTION | 1.6 | 7 | double helix,feature,mispair,structure | |
| 84 | 2BZF|1|B+2BZF|1|C | Structural basis for DNA bridging by barrier-to-autointegration factor (BAF) | X-RAY DIFFRACTION | 2.87 | 7 | chromatin,nucleosome,structural | |
| 85 | 1Q2T|1|D | Solution structure of d(5mCCTCTCC)4 | SOLUTION NMR | 7 | I-motif,parallel helix,structure | ||
| 86 | 1Q2T|1|B | Solution structure of d(5mCCTCTCC)4 | SOLUTION NMR | 7 | I-motif,parallel helix,structure | ||
| 87 | 2AXY|1|F | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 7 | post-transcriptional,regulatory | |
| 88 | 2AXY|1|E | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 7 | post-transcriptional,regulatory | |
| 89 | 2AXY|1|H | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 7 | post-transcriptional,regulatory | |
| 90 | 2AXY|1|G | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 7 | post-transcriptional,regulatory | |
| 91 | 2PY5|1|E | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,polymerase,transferase | |
| 92 | 2PY5|1|D | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 7 | enzyme,polymerase,transferase | |
| 93 | 1MF5|1|A | GCATGCT Quadruplex | X-RAY DIFFRACTION | 1.1 | 7 | quadruplex,structure | |
| 94 | 1QYK|1|B | GCATGCT + Barium | X-RAY DIFFRACTION | 1.4 | 7 | quadruplex,structure | |
| 95 | 1MF5|1|B | GCATGCT Quadruplex | X-RAY DIFFRACTION | 1.1 | 7 | quadruplex,structure | |
| 96 | 1QYK|1|A | GCATGCT + Barium | X-RAY DIFFRACTION | 1.4 | 7 | quadruplex,structure | |
| 97 | 3F23|1|F | Crystal structure of Zalpha in complex with d(CGGCCG) | X-RAY DIFFRACTION | 2.7 | 7 | Z-form double helix,double helix,structure | enzyme,hydrolase |
| 98 | 1QYL|1|A | GCATGCT + Vanadium | X-RAY DIFFRACTION | 1 | 7 | quadruplex,structure | |
| 99 | 2KZZ|1|B | KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY | X-RAY DIFFRACTION | 2.25 | 7 | enzyme,polymerase,transferase | |
| 100 | 1QZL|1|X | GCATGCT + Cobalt | X-RAY DIFFRACTION | 2.85 | 7 | quadruplex,structure | |
| 101 | 2Z70|1|B | E.coli RNase 1 in complex with d(CGCGATCGCG) | X-RAY DIFFRACTION | 1.7 | 7 | enzyme,hydrolase,nuclease | |
| 102 | 2KFZ|1|B | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY | X-RAY DIFFRACTION | 2.03 | 7 | enzyme,polymerase,transferase | |
| 103 | 1PUP|1|A | CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.7 | 7 | NAKB_NA_annotation | NAKB_protein_annotation |
| 104 | 1PUP|1|B | CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.7 | 7 | NAKB_NA_annotation | NAKB_protein_annotation |
| 105 | 2KFN|1|B | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE | X-RAY DIFFRACTION | 2.03 | 7 | enzyme,polymerase,transferase |
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