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Equivalence class DNA_all_04418.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11NK0|1|C+ 1NK0|1|B (rep)DNA TEMPLATE STRAND, DNA PRIMER STRANDADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.72004-03-30
22DP6|1|C+ 2DP6|1|D5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*CP*GP*CP*AP*AP*CP*A)-3'Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNAX-ray diffraction1.82007-05-22
33MFI|1|T+ 3MFI|1|P5'-D(*TP*AP*AP*(TTD)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3'DNA Polymerase Eta in Complex With a cis-syn Thymidine DimerX-ray diffraction1.762010-06-23
42DEM|1|C+ 2DEM|1|D5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*AP*GP*CP*AP*AP*CP*A)-3'synthetic constructCrystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNAX-ray diffraction1.952007-04-24
51U4B|1|C+ 1U4B|1|BDNA template strand with 8-oxoguanine, DNA primer strandExtension of an adenine-8oxoguanine mismatchX-ray diffraction1.62004-09-14
61NKC|1|B+ 1NKC|1|CDNA PRIMER STRAND, DNA TEMPLATE STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.X-ray diffraction1.82004-03-30
71NK8|1|C+ 1NK8|1|BDNA TEMPLATE STRAND, DNA PRIMER STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.X-ray diffraction1.92004-03-30
81NJX|1|C+ 1NJX|1|BDNA TEMPLATE STRAND, DNA PRIMER STRANDTHYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.652004-03-30
91NK7|1|C+ 1NK7|1|BDNA TEMPLATE STRAND, DNA PRIMER STRANDGUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.92004-03-30
102DDG|1|C+ 2DDG|1|D5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*GP*GP*CP*AP*AP*CP*A)-3'Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNAX-ray diffraction2.12007-02-13
113FDQ|1|C+ 3FDQ|1|D5'-D(*AP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*AP*AP*T)-3', 5'-D(*TP*AP*TP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*A)-3'Recognition of AT-rich DNA binding sites by the MogR RepressorX-ray diffraction1.752009-06-02
123CVU|1|C+ 3CVU|1|DDNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3')Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesionX-ray diffraction22008-11-04
131U45|1|C+ 1U45|1|BDNA template strand with 8-oxoguanine, DNA primer strand8oxoguanine at the pre-insertion site of the polymerase active siteX-ray diffraction2.012004-09-14
141RH6|1|C+ 1RH6|1|D5'-D(*CP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*G)-3', 5'-D(P*CP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*G)-3'Bacteriophage Lambda Excisionase (Xis)-DNA ComplexX-ray diffraction1.72004-06-29
151NK9|1|C+ 1NK9|1|BDNA TEMPLATE STRAND, DNA PRIMER STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.X-ray diffraction1.92004-03-30
161NJW|1|C+ 1NJW|1|BDNA TEMPLATE STRAND, DNA PRIMER STRANDGUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.92004-03-30
173CVV|1|C+ 3CVV|1|DDNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3')Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactorX-ray diffraction2.12009-06-16
182HHQ|1|C+ 2HHQ|1|B5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*GP*TP*AP*TP*GP*A)-3', 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3'O6-methyl-guanine:T pair in the polymerase-10 basepair positionX-ray diffraction1.82006-12-12
193BQ1|1|T+ 3BQ1|1|PDNA (5'-D(*DT*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DG)-3')Insertion ternary complex of Dbh DNA polymeraseX-ray diffraction2.72008-04-08
201NKB|1|C+ 1NKB|1|BDNA TEMPLATE STRAND, DNA PRIMER STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.X-ray diffraction22004-03-30
212XHI|1|B+ 2XHI|1|C5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'Separation-of-function mutants unravel the dual reaction mode of human 8-oxoguanine DNA glycosylaseX-ray diffraction1.552011-01-26
221U48|1|C+ 1U48|1|BDNA template strand with 8-oxoguanine, DNA primer strandExtension of a cytosine-8-oxoguanine base pairX-ray diffraction2.12004-09-14
232VS8|1|D+ 2VS8|1|B+ 2VS8|1|C+ 2VS8|1|E5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3', 5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3'Desulfurococcus mucosusThe crystal structure of I-DmoI in complex with DNA and MnX-ray diffraction2.12008-11-11
242VS8|1|I+ 2VS8|1|G+ 2VS8|1|H+ 2VS8|1|J5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3', 5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3'Desulfurococcus mucosusThe crystal structure of I-DmoI in complex with DNA and MnX-ray diffraction2.12008-11-11
252VS8|1|N+ 2VS8|1|L+ 2VS8|1|M+ 2VS8|1|O5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3', 5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3'Desulfurococcus mucosusThe crystal structure of I-DmoI in complex with DNA and MnX-ray diffraction2.12008-11-11
261U47|1|C+ 1U47|1|BDNA template strand with 8-oxoguanine, DNA primer strandcytosine-8-Oxoguanine base pair at the polymerase active siteX-ray diffraction22004-09-14
272NOH|1|B+ 2NOH|1|C5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3'Structure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-ray diffraction2.012006-11-21
281XC9|1|C+ 1XC9|1|BDNA template strand with benzo[a]pyrene adduct, DNA primer strandStructure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replicationX-ray diffraction1.92004-12-14
291NK6|1|C+ 1NK6|1|BDNA TEMPLATE STRAND, DNA PRIMER STRANDCYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction2.12004-03-30
302WQ6|1|C+ 2WQ6|1|D5'-D(*AP*CP*AP*GP*CP*GP*GP*TDYP*CDWP*GP* CP*AP*AP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP* CP*GP*CP*TP*G)-3'Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesionX-ray diffraction2.32010-02-23
311U49|1|C+ 1U49|1|BDNA template strand with 8-oxoguanine, DNA primer strandAdenine-8oxoguanine mismatch at the polymerase active siteX-ray diffraction2.152004-09-14
323IAG|1|A+ 3IAG|1|B5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*AP*CP*AP*CP*GP*AP*T)-3', 5'-D(*TP*TP*AP*TP*CP*GP*TP*GP*TP*GP*AP*AP*AP*GP*A)-3'CSL (RBP-Jk) bound to HES-1 nonconsensus siteX-ray diffraction22009-11-10
331LWY|1|D+ 1LWY|1|E5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3'hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanineX-ray diffraction2.012003-02-25
343BQ0|1|T+ 3BQ0|1|PDNA (5'-D(*DT*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DG)-3')synthetic constructPre-insertion binary complex of Dbh DNA polymeraseX-ray diffraction2.62008-04-08
351EBM|1|C+ 1EBM|1|DDNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3')CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (HOGG1) BOUND TO A SUBSTRATE OLIGONUCLEOTIDEX-ray diffraction2.12000-03-20
361LWW|1|D+ 1LWW|1|E5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3'Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanineX-ray diffraction2.12003-02-25
373KNT|1|E+ 3KNT|1|F5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-ray diffraction2.72010-02-02
383KNT|1|G+ 3KNT|1|H5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-ray diffraction2.72010-02-02
393KNT|1|I+ 3KNT|1|J5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-ray diffraction2.72010-02-02
403KNT|1|K+ 3KNT|1|L5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-ray diffraction2.72010-02-02
411M3Q|1|B+ 1M3Q|1|C5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(DRZ)P*GP*TP*CP*TP*AP*CP*C)-3'Crystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanineX-ray diffraction1.92004-02-17
422NOE|1|B+ 2NOE|1|C5'-D(*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3'Structure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-ray diffraction2.22006-11-21
432NOL|1|B+ 2NOL|1|C5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3'Structure of catalytically inactive human 8-oxoguanine glycosylase distal crosslink to oxoG DNAX-ray diffraction2.572006-11-21
442IMW|1|T+ 2IMW|1|S5'-D(*TP*AP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA PolymeraseX-ray diffraction2.052007-01-16
452NQJ|1|C+ 2NQJ|1|D5'-D(*GP*CP*GP*TP*CP*CP*(3DR)P*CP*GP*AP*CP*GP*AP*CP*G)-3', 5'-D(*CP*GP*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*GP*C)-3'Crystal structure of Escherichia coli endonuclease IV (Endo IV) E261Q mutant bound to damaged DNAX-ray diffraction2.452007-11-06
461LWV|1|D+ 1LWV|1|E5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3'Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanineX-ray diffraction2.32003-02-25
473BQ2|1|T+ 3BQ2|1|PDNA (5'-D(*DTP*DTP*DCP*DCP*DGP*DCP*DCP*DCP*DGP*DGP*DCP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DGP*DAP*DAP*DGP*DCP*DCP*DGP*DGP*DCP*DGP*DG)-3')synthetic constructPost-insertion binary complex of Dbh DNA polymeraseX-ray diffraction2.72008-04-08
482NOF|1|B+ 2NOF|1|C5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*C*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3'Structure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNAX-ray diffraction2.352006-11-21
492NOI|1|B+ 2NOI|1|C5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*C*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3'Structure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNAX-ray diffraction2.352006-11-21
503BRG|1|A+ 3BRG|1|BDNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3')CSL (RBP-Jk) bound to DNAX-ray diffraction2.22008-04-01
512RDJ|1|F+ 2RDJ|1|EDNA (5'-D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3'), DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3')Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsX-ray diffraction2.22008-06-24
523L4J|1|C+ 3L4J|1|BDNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3')Topoisomerase II-DNA cleavage complex, apoX-ray diffraction2.482010-05-26
533L4J|1|E+ 3L4J|1|DDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*)-3')Topoisomerase II-DNA cleavage complex, apoX-ray diffraction2.482010-05-26
543KMP|1|C+ 3KMP|1|D5'-D(P*AP*TP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*AP*TP*A)-3', 5'-D(P*GP*TP*AP*TP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*A)-3'Crystal Structure of SMAD1-MH1/DNA complexX-ray diffraction2.72010-02-23
553BRD|1|B+ 3BRD|1|CDNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'), DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3')CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121X-ray diffraction2.212008-04-01
561M3H|1|B+ 1M3H|1|C+ 1M3H|1|D5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3'Crystal Structure of Hogg1 D268E Mutant with Product OligonucleotideX-ray diffraction2.052004-04-20
571P7H|1|A+ 1P7H|1|B+ 1P7H|1|C+ 1P7H|1|D5'-D(*AP*AP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*A)-3', 5'-D(*TP*TP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*A)-3'Structure of NFAT1 bound as a dimer to the HIV-1 LTR kB elementX-ray diffraction2.62003-09-23
582NOZ|1|B+ 2NOZ|1|C5'-D(*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3'Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNAX-ray diffraction2.432006-11-21
591HU0|1|D+ 1HU0|1|E5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3'CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEXX-ray diffraction2.352003-02-25
602CGP|1|C+ 2CGP|1|BDNA (5'-D(*AP*TP*TP*AP*AP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'), DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*TP*AP*AP*T)-3')CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATEX-ray diffraction2.21998-02-04
611K79|1|B+ 1K79|1|CDNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*AP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*TP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3')Ets-1(331-440)+GGAA duplexX-ray diffraction2.42002-01-04
621K79|1|E+ 1K79|1|FDNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*AP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*TP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3')Ets-1(331-440)+GGAA duplexX-ray diffraction2.42002-01-04
631TTU|1|B+ 1TTU|1|C5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3', 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3'Crystal Structure of CSL bound to DNAX-ray diffraction2.852004-08-31
642H1K|1|C+ 2H1K|1|D15-mer DNACrystal structure of the Pdx1 homeodomain in complex with DNAX-ray diffraction2.422007-03-20
651FN7|1|C+ 1FN7|1|DDNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3')COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN BASE-EXCISION DNA REPAIR PROTEINX-ray diffraction2.62001-04-21
662H1K|1|E+ 2H1K|1|F15-mer DNACrystal structure of the Pdx1 homeodomain in complex with DNAX-ray diffraction2.422007-03-20
671K7A|1|B+ 1K7A|1|CDNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*GP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*CP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3')Ets-1(331-440)+GGAG duplexX-ray diffraction2.82002-01-04
681K7A|1|E+ 1K7A|1|FDNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*GP*AP*TP*GP*T)-3'), DNA (5'-D(*CP*AP*CP*AP*TP*CP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3')Ets-1(331-440)+GGAG duplexX-ray diffraction2.82002-01-04
691QPI|1|MDNA (5'-D(*CP*CP*TP*AP*TP*CP*AP*AP*TP*GP*AP*TP*AP*GP*A)-3')CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-ray diffraction2.52000-02-28
701QPI|1|NDNA (5'-D(*TP*CP*TP*AP*TP*CP*AP*TP*TP*GP*AP*TP*AP*GP*G)-3')CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-ray diffraction2.52000-02-28
713CVY|1|C+ 3CVY|1|DDNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3')Drosophila melanogaster (6-4) photolyase bound to repaired ds DNAX-ray diffraction2.72008-11-04
722IVK|1|E+ 2IVK|1|F5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*T)-3', 5'-D(*AP*AP*TP*TP*CP*GP*AP*TP*CP*GP *AP*AP*TP*TP*C)-3'synthetic constructCrystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNAX-ray diffraction2.92007-01-02
732IVK|1|G+ 2IVK|1|H5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*T)-3', 5'-D(*AP*AP*TP*TP*CP*GP*AP*TP*CP*GP *AP*AP*TP*TP*C)-3'synthetic constructCrystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNAX-ray diffraction2.92007-01-02
742O8B|1|E+ 2O8B|1|F5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*CP*GP*CP*TP*AP*GP*G)-3', 5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*TP*TP*C)-3'human MutSalpha (MSH2/MSH6) bound to ADP and a G T mispairX-ray diffraction2.752007-06-05
753L4K|1|C+ 3L4K|1|BDNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3')Topoisomerase II-DNA cleavage complex, metal-boundX-ray diffraction2.982010-05-26
763L4K|1|E+ 3L4K|1|DDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*)-3')Topoisomerase II-DNA cleavage complex, metal-boundX-ray diffraction2.982010-05-26
773CVX|1|C+ 3CVX|1|DDNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3')Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesionX-ray diffraction3.22009-10-13
783GLF|1|K+ 3GLF|1|LDNA (5'-D(*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3')Crystal Structure of the Ecoli Clamp Loader Bound to Primer-Template DNAX-ray diffraction3.3882009-05-26
793GLF|1|M+ 3GLF|1|NDNA (5'-D(*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3')Crystal Structure of the Ecoli Clamp Loader Bound to Primer-Template DNAX-ray diffraction3.3882009-05-26
801IMH|1|A+ 1IMH|1|B5'-D(*TP*TP*GP*CP*TP*GP*GP*AP*AP*AP*AP*AP*TP*AP*G)-3', 5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*TP*TP*CP*CP*AP*GP*C)-3'TonEBP/DNA COMPLEXX-ray diffraction2.862002-02-01
813GLI|1|K+ 3GLI|1|LDNA (5'-D(*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3')Crystal Structure of the E. coli clamp loader bound to Primer-Template DNA and Psi PeptideX-ray diffraction3.52009-05-26
823GLI|1|M+ 3GLI|1|NDNA (5'-D(*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3')Crystal Structure of the E. coli clamp loader bound to Primer-Template DNA and Psi PeptideX-ray diffraction3.52009-05-26
833A5T|1|C+ 3A5T|1|D5'-D(*CP*TP*GP*AP*TP*GP*AP*GP*TP*CP*AP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP*TP*CP*AP*G)-3'Crystal structure of MafG-DNA complexX-ray diffraction2.82009-10-13
841OWR|1|A+ 1OWR|1|BNFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus StrandCRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-ray diffraction32004-02-10
851OWR|1|C+ 1OWR|1|DNFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus StrandCRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-ray diffraction32004-02-10
861OWR|1|E+ 1OWR|1|FNFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus StrandCRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-ray diffraction32004-02-10
872O8D|1|E+ 2O8D|1|F5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*CP*GP*CP*TP*AP*GP*G)-3', 5'-D(*CP*CP*TP*AP*GP*CP*GP*(DU)P*GP*CP*GP*GP*TP*TP*C)-3'human MutSalpha (MSH2/MSH6) bound to ADP and a G dU mispairX-ray diffraction32007-06-05
881OWR|1|G+ 1OWR|1|HNFAT1 Monomeric Binding Site, Plus Strand, NFAT1 Monomeric Binding Site, Minus StrandCRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-ray diffraction32004-02-10
891O3R|1|C+ 1O3R|1|B5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3'PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXESX-ray diffraction32003-04-08
903N6S|1|B+ 3N6S|1|CDNA (5'-D(*AP*TP*GP*GP*CP*AP*GP*AP*GP*CP*CP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*CP*GP*GP*GP*CP*TP*CP*TP*GP*CP*CP*A)-3')Crystal structure of human mitochondrial mTERF in complex with a 15-mer DNA encompassing the tRNALeu(UUR) binding sequenceX-ray diffraction3.12010-06-16
912O8E|1|E+ 2O8E|1|F5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*GP*GP*CP*TP*AP*GP*G)-3', 5'-D(*CP*CP*TP*AP*GP*CP*CP*TP*GP*CP*GP*GP*TP*TP*C)-3'human MutSalpha (MSH2/MSH6) bound to a G T mispair, with ADP bound to MSH2 onlyX-ray diffraction3.32007-06-05
922O8C|1|E+ 2O8C|1|F5'-D(*GP*AP*AP*CP*CP*GP*CP*(6OG)P*CP*GP*CP*TP*AP*GP*G)-3', 5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*TP*TP*C)-3'human MutSalpha (MSH2/MSH6) bound to ADP and an O6-methyl-guanine T mispairX-ray diffraction3.372007-06-05
931SKN|1|A+ 1SKN|1|BDNA (5'-D(*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*TP*CP*CP*C)-3'), DNA (5'-D(*CP*AP*GP*GP*GP*AP*TP*GP*AP*CP*AP*TP*TP*GP*T)-3')THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIFX-ray diffraction2.51998-06-24
941O3S|1|C+ 1O3S|1|B5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3'PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXESX-ray diffraction32003-04-08
951O3Q|1|C+ 1O3Q|1|B5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3'PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXESX-ray diffraction32003-04-08
963BRF|1|B+ 3BRF|1|CDNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'), DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3')CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221X-ray diffraction2.472008-04-01
973CVW|1|C+ 3CVW|1|DDNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3')Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0X-ray diffraction3.22009-10-13
982FO1|1|B+ 2FO1|1|C5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3', 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3'Crystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNAX-ray diffraction3.122006-03-21
991DSZ|1|C+ 1DSZ|1|DDNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)-3')STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1X-ray diffraction1.72000-07-10
1001N39|1|B+ 1N39|1|CDNA complement strand, DNA inhibitor strandStructural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-ray diffraction2.22003-03-04
1011N3A|1|B+ 1N3A|1|CDNA complement strand, DNA inhibitor strandStructural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-ray diffraction2.22003-03-04
1029ANT|1|C+ 9ANT|1|DDNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3')ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-ray diffraction2.41998-10-14
1031OZJ|1|C+ 1OZJ|1|DSmad binding elementCrystal structure of Smad3-MH1 bound to DNA at 2.4 A resolutionX-ray diffraction2.42004-03-23
1041B8I|1|C+ 1B8I|1|DDNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'), DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3')STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEXX-ray diffraction2.41999-04-12
1059ANT|1|E+ 9ANT|1|FDNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3')ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-ray diffraction2.41998-10-14
1061PDN|1|A+ 1PDN|1|BDNA (5'-D(*AP*AP*CP*GP*TP*CP*AP*CP*GP*GP*TP*TP*GP*AP*C)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*AP*AP*CP*CP*GP*TP*GP*AP*CP*G)-3')CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONSX-ray diffraction2.51995-07-31
1071YFJ|1|1+ 1YFJ|1|25'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3'T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-ray diffraction2.692005-05-17
1081YFJ|1|3+ 1YFJ|1|45'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3'T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-ray diffraction2.692005-05-17
1091YFJ|1|5+ 1YFJ|1|65'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3'T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-ray diffraction2.692005-05-17
1101YFJ|1|7+ 1YFJ|1|85'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3'T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-ray diffraction2.692005-05-17
1111N3C|1|B+ 1N3C|1|CDNA complement strand, 8-oxoG-containing DNAStructural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-ray diffraction2.72003-03-04
1121BVO|1|DDNA DUPLEXDORSAL HOMOLOGUE GAMBIF1 BOUND TO DNAX-ray diffraction2.71999-07-12
1131BVO|1|EDNA DUPLEXDORSAL HOMOLOGUE GAMBIF1 BOUND TO DNAX-ray diffraction2.71999-07-12
1142BGW|1|C+ 2BGW|1|D5'-D(*GP*AP*TP*CP*AP*CP*AP*GP*AP*TP *GP*CP*TP*GP*A)-3', 5'-D(*TP*CP*AP*GP*CP*AP*TP*CP*TP*GP *TP*GP*AP*TP*C)-3'synthetic constructXPF from Aeropyrum pernix, complex with DNAX-ray diffraction2.82005-02-23
1151OCT|1|A+ 1OCT|1|BDNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3')CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULESX-ray diffraction31994-08-31
1162ERE|1|C+ 2ERE|1|D5'-D(*TP*TP*GP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*CP*A)-3'Crystal Structure of a Leu3 DNA-binding domain complexed with a 15mer DNA duplexX-ray diffraction32006-04-04
1172ERG|1|C+ 2ERG|1|D5'-D(*TP*TP*GP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*CP*A)-3'Crystal Structure of Leu3 DNA-binding domain with a single H50C mutation complexed with a 15mer DNA duplexX-ray diffraction3.152006-04-04
1181CQT|1|M+ 1CQT|1|NDNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3')CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENTX-ray diffraction3.21999-11-15
1191CQT|1|O+ 1CQT|1|PDNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3')CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENTX-ray diffraction3.21999-11-15
1202OEH|1|B+ 2OEH|1|C5'-D(P*TP*AP*CP*AP*AP*TP*AP*TP*AP*AP*CP*GP*TP*CP*G)-3', 5'-D(P*CP*GP*AP*CP*GP*TP*TP*AP*TP*AP*TP*TP*GP*T)-3'Determination of the Three-dimensional Structure of the Mrf2-DNA Complex Using Paramagnetic Spin LabelingSolution NMR2007-08-07
1212FF0|1|B+ 2FF0|1|CGGCTCAGGGCCACAG, CTGTGGCCCTGAGCCSolution Structure of Steroidogenic Factor 1 DNA Binding Domain Bound to its Target Sequence in the Inhibin alpha-subunit PromoterSolution NMR2006-04-11
1221TF3|1|E+ 1TF3|1|F5S RNA GENETFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURESSolution NMR1997-09-17

Release history

Release0.10.20.30.40.50.60.70.80.90.100.110.120.130.140.150.160.170.18
Date2011-02-052011-02-122011-02-162011-02-192011-02-262011-03-052011-03-122011-03-192011-03-262011-04-022011-04-092011-04-112011-04-162011-04-232011-04-302011-05-072011-05-142011-05-21

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
1
3GLF|1|M+3GLF|1|N		Crystal Structure of the Ecoli Clamp Loader Bound to Primer-Template DNAX-RAY DIFFRACTION3.38815enzyme,polymerase,transferase
2
3GLF|1|K+3GLF|1|L		Crystal Structure of the Ecoli Clamp Loader Bound to Primer-Template DNAX-RAY DIFFRACTION3.38815enzyme,polymerase,transferase
3
3GLI|1|M+3GLI|1|N		Crystal Structure of the E. coli clamp loader bound to Primer-Template DNA and Psi PeptideX-RAY DIFFRACTION3.515enzyme,polymerase,transferase
4
3GLI|1|K+3GLI|1|L		Crystal Structure of the E. coli clamp loader bound to Primer-Template DNA and Psi PeptideX-RAY DIFFRACTION3.515enzyme,polymerase,transferase
5
1O3S|1|C+1O3S|1|B		PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXESX-RAY DIFFRACTION315double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
6
1O3R|1|C+1O3R|1|B		PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXESX-RAY DIFFRACTION315double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
7
3L4J|1|C+3L4J|1|B		Topoisomerase II-DNA cleavage complex, apoX-RAY DIFFRACTION2.4815double helix,structureenzyme,isomerase
8
3L4K|1|C+3L4K|1|B		Topoisomerase II-DNA cleavage complex, metal-boundX-RAY DIFFRACTION2.9815double helix,structureenzyme,isomerase
9
3L4K|1|E+3L4K|1|D		Topoisomerase II-DNA cleavage complex, metal-boundX-RAY DIFFRACTION2.9815double helix,structureenzyme,isomerase
10
3L4J|1|E+3L4J|1|D		Topoisomerase II-DNA cleavage complex, apoX-RAY DIFFRACTION2.4815double helix,structureenzyme,isomerase
11
2NOF|1|B+2NOF|1|C		Structure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNAX-RAY DIFFRACTION2.3515B-form double helix,double helix,structureenzyme,hydrolase
12
2NOI|1|B+2NOI|1|C		Structure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNAX-RAY DIFFRACTION2.3515B-form double helix,double helix,structureenzyme,hydrolase
13
2NOE|1|B+2NOE|1|C		Structure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-RAY DIFFRACTION2.215double helix,structureenzyme,hydrolase
14
1N39|1|B+1N39|1|C		Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-RAY DIFFRACTION2.215B-form double helix,double helix,structureenzyme,hydrolase
15
1N3A|1|B+1N3A|1|C		Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-RAY DIFFRACTION2.215B-form double helix,double helix,structureenzyme,hydrolase
16
1M3Q|1|B+1M3Q|1|C		Crystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanineX-RAY DIFFRACTION1.915B-form double helix,double helix,structureenzyme,hydrolase
17
2NOZ|1|B+2NOZ|1|C		Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNAX-RAY DIFFRACTION2.4315B-form double helix,double helix,structureenzyme,hydrolase
18
1LWW|1|D+1LWW|1|E		Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanineX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,hydrolase
19
1N3C|1|B+1N3C|1|C		Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-RAY DIFFRACTION2.715double helix,structureenzyme,hydrolase
20
2NOH|1|B+2NOH|1|C		Structure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-RAY DIFFRACTION2.0115B-form double helix,double helix,structureenzyme,hydrolase
21
1FN7|1|C+1FN7|1|D		COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN BASE-EXCISION DNA REPAIR PROTEINX-RAY DIFFRACTION2.615double helix,structureenzyme,hydrolase
22
1M3H|1|B+1M3H|1|C+1M3H|1|D		Crystal Structure of Hogg1 D268E Mutant with Product OligonucleotideX-RAY DIFFRACTION2.0515B-form double helix,double helix,structureenzyme,hydrolase
23
2NOL|1|B+2NOL|1|C		Structure of catalytically inactive human 8-oxoguanine glycosylase distal crosslink to oxoG DNAX-RAY DIFFRACTION2.5715enzyme,hydrolase
24
1LWY|1|D+1LWY|1|E		hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanineX-RAY DIFFRACTION2.0115B-form double helix,double helix,structureenzyme,hydrolase
25
1HU0|1|D+1HU0|1|E		CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEXX-RAY DIFFRACTION2.3515B-form double helix,double helix,structureenzyme,hydrolase
26
1LWV|1|D+1LWV|1|E		Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanineX-RAY DIFFRACTION2.315B-form double helix,double helix,structureenzyme,hydrolase
27
2XHI|1|B+2XHI|1|C		Separation-of-function mutants unravel the dual reaction mode of human 8-oxoguanine DNA glycosylaseX-RAY DIFFRACTION1.5515B-form double helix,double helix,structureenzyme,hydrolase
28
2O8C|1|E+2O8C|1|F		human MutSalpha (MSH2/MSH6) bound to ADP and an O6-methyl-guanine T mispairX-RAY DIFFRACTION3.3715double helix,structureDNA replication/repair,regulatory
29
2O8B|1|E+2O8B|1|F		human MutSalpha (MSH2/MSH6) bound to ADP and a G T mispairX-RAY DIFFRACTION2.7515B-form double helix,double helix,structureDNA replication/repair,regulatory
30
2O8E|1|E+2O8E|1|F		human MutSalpha (MSH2/MSH6) bound to a G T mispair, with ADP bound to MSH2 onlyX-RAY DIFFRACTION3.315B-form double helix,double helix,structureDNA replication/repair,regulatory
31
2O8D|1|E+2O8D|1|F		human MutSalpha (MSH2/MSH6) bound to ADP and a G dU mispairX-RAY DIFFRACTION315B-form double helix,double helix,structureDNA replication/repair,regulatory
32
1EBM|1|C+1EBM|1|D		CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (HOGG1) BOUND TO A SUBSTRATE OLIGONUCLEOTIDEX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,hydrolase
33
3CVW|1|C+3CVW|1|D		Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0X-RAY DIFFRACTION3.215enzyme,lyase
34
3CVY|1|C+3CVY|1|D		Drosophila melanogaster (6-4) photolyase bound to repaired ds DNAX-RAY DIFFRACTION2.715enzyme,lyase
35
3CVV|1|C+3CVV|1|D		Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactorX-RAY DIFFRACTION2.115enzyme,lyase
36
3CVU|1|C+3CVU|1|D		Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesionX-RAY DIFFRACTION215enzyme,lyase
37
3CVX|1|C+3CVX|1|D		Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesionX-RAY DIFFRACTION3.215enzyme,lyase
38
2WQ6|1|C+2WQ6|1|D		Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesionX-RAY DIFFRACTION2.315enzyme,lyase
39
3KNT|1|G+3KNT|1|H		Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-RAY DIFFRACTION2.715B-form double helix,double helix,structureenzyme,hydrolase
40
3KNT|1|E+3KNT|1|F		Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-RAY DIFFRACTION2.715B-form double helix,double helix,structureenzyme,hydrolase
41
3KNT|1|I+3KNT|1|J		Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-RAY DIFFRACTION2.715B-form double helix,double helix,structureenzyme,hydrolase
42
3KNT|1|K+3KNT|1|L		Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanineX-RAY DIFFRACTION2.715B-form double helix,double helix,structureenzyme,hydrolase
43
2DDG|1|C+2DDG|1|D		Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNAX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,hydrolase
44
2DP6|1|C+2DP6|1|D		Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNAX-RAY DIFFRACTION1.815B-form double helix,double helix,structureenzyme,hydrolase
45
2DEM|1|C+2DEM|1|D		Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNAX-RAY DIFFRACTION1.9515B-form double helix,double helix,structureenzyme,hydrolase
46
2VS8|1|D+2VS8|1|B+2VS8|1|C+2VS8|1|E		The crystal structure of I-DmoI in complex with DNA and MnX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,hydrolase,nuclease
47
2VS8|1|N+2VS8|1|L+2VS8|1|M+2VS8|1|O		The crystal structure of I-DmoI in complex with DNA and MnX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,hydrolase,nuclease
48
2VS8|1|I+2VS8|1|G+2VS8|1|H+2VS8|1|J		The crystal structure of I-DmoI in complex with DNA and MnX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,hydrolase,nuclease
49
1NKB|1|C+1NKB|1|B		A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.X-RAY DIFFRACTION215B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
50
1NK9|1|C+1NK9|1|B		A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.X-RAY DIFFRACTION1.915double helix,feature,mispair,structureenzyme,polymerase,transferase
51
1K79|1|B+1K79|1|C		Ets-1(331-440)+GGAA duplexX-RAY DIFFRACTION2.415B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
52
1K79|1|E+1K79|1|F		Ets-1(331-440)+GGAA duplexX-RAY DIFFRACTION2.415B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
53
1K7A|1|E+1K7A|1|F		Ets-1(331-440)+GGAG duplexX-RAY DIFFRACTION2.815B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
54
2H1K|1|C+2H1K|1|D		Crystal structure of the Pdx1 homeodomain in complex with DNAX-RAY DIFFRACTION2.4215B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
55
9ANT|1|C+9ANT|1|D		ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-RAY DIFFRACTION2.415B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
56
9ANT|1|E+9ANT|1|F		ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-RAY DIFFRACTION2.415B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
57
1NJW|1|C+1NJW|1|B		GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.915B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
58
1NJX|1|C+1NJX|1|B		THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.6515B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
59
1TF3|1|E+1TF3|1|F		TFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURESSOLUTION NMR15double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
60
1RH6|1|C+1RH6|1|D		Bacteriophage Lambda Excisionase (Xis)-DNA ComplexX-RAY DIFFRACTION1.715B-form double helix,double helix,structureenzyme,recombinase
61
2IVK|1|E+2IVK|1|F		Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNAX-RAY DIFFRACTION2.915double helix,structureenzyme,hydrolase,nuclease
62
1XC9|1|C+1XC9|1|B		Structure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replicationX-RAY DIFFRACTION1.915B-form double helix,double helix,structureenzyme,polymerase,transferase
63
1YFJ|1|7+1YFJ|1|8		T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-RAY DIFFRACTION2.6915B-form double helix,double helix,structureenzyme,methylase,transferase
64
1P7H|1|A+1P7H|1|B+1P7H|1|C+1P7H|1|D		Structure of NFAT1 bound as a dimer to the HIV-1 LTR kB elementX-RAY DIFFRACTION2.615B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
65
1B8I|1|C+1B8I|1|D		STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEXX-RAY DIFFRACTION2.415B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
66
1YFJ|1|1+1YFJ|1|2		T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-RAY DIFFRACTION2.6915B-form double helix,double helix,structureenzyme,methylase,transferase
67
1YFJ|1|3+1YFJ|1|4		T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-RAY DIFFRACTION2.6915B-form double helix,double helix,structureenzyme,methylase,transferase
68
3FDQ|1|C+3FDQ|1|D		Recognition of AT-rich DNA binding sites by the MogR RepressorX-RAY DIFFRACTION1.7515B-form double helix,double helix,structureregulatory,transcription
69
2H1K|1|E+2H1K|1|F		Crystal structure of the Pdx1 homeodomain in complex with DNAX-RAY DIFFRACTION2.4215B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
70
1NK6|1|C+1NK6|1|B		CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,polymerase,transferase
71
1BVO|1|E		DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNAX-RAY DIFFRACTION2.715DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
72
1QPI|1|N		CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-RAY DIFFRACTION2.515B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription
73
1QPI|1|M		CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-RAY DIFFRACTION2.515B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription
74
1PDN|1|A+1PDN|1|B		CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONSX-RAY DIFFRACTION2.515B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
75
3N6S|1|B+3N6S|1|C		Crystal structure of human mitochondrial mTERF in complex with a 15-mer DNA encompassing the tRNALeu(UUR) binding sequenceX-RAY DIFFRACTION3.115B-form double helix,double helix,structureRNA-binding transcription factor,regulatory,transcription
76
1SKN|1|A+1SKN|1|B		THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIFX-RAY DIFFRACTION2.515B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
77
1NKC|1|B+1NKC|1|C		A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.X-RAY DIFFRACTION1.815B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
78
1OZJ|1|C+1OZJ|1|D		Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolutionX-RAY DIFFRACTION2.415B-form double helix,double helix,structureβ-sheet,DNA-binding transcription factor (TF),SMAD-like,regulatory,transcription
79
1DSZ|1|C+1DSZ|1|D		STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1X-RAY DIFFRACTION1.715B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
80
1YFJ|1|5+1YFJ|1|6		T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific ContactX-RAY DIFFRACTION2.6915B-form double helix,double helix,structureenzyme,methylase,transferase
81
2FF0|1|B+2FF0|1|C		Solution Structure of Steroidogenic Factor 1 DNA Binding Domain Bound to its Target Sequence in the Inhibin alpha-subunit PromoterSOLUTION NMR15double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
82
2OEH|1|B+2OEH|1|C		Determination of the Three-dimensional Structure of the Mrf2-DNA Complex Using Paramagnetic Spin LabelingSOLUTION NMR15double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
83
3KMP|1|C+3KMP|1|D		Crystal Structure of SMAD1-MH1/DNA complexX-RAY DIFFRACTION2.715B-form double helix,double helix,structureβ-sheet,DNA-binding transcription factor (TF),SMAD-like,regulatory,transcription
84
3BRD|1|B+3BRD|1|C		CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121X-RAY DIFFRACTION2.2115B-form double helix,double helix,structureDNA-binding transcription factor (TF),cell signaling,immunoglobulin (Ig) fold,regulatory,rel homology,transcription
85
3A5T|1|C+3A5T|1|D		Crystal structure of MafG-DNA complexX-RAY DIFFRACTION2.815B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
86
1TTU|1|B+1TTU|1|C		Crystal Structure of CSL bound to DNAX-RAY DIFFRACTION2.8515B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
87
2FO1|1|B+2FO1|1|C		Crystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNAX-RAY DIFFRACTION3.1215B-form double helix,double helix,structureDNA-binding transcription factor (TF),cell signaling,immunoglobulin (Ig) fold,regulatory,rel homology,transcription
88
1IMH|1|A+1IMH|1|B		TonEBP/DNA COMPLEXX-RAY DIFFRACTION2.8615B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
89
3IAG|1|A+3IAG|1|B		CSL (RBP-Jk) bound to HES-1 nonconsensus siteX-RAY DIFFRACTION215B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
90
3BRG|1|A+3BRG|1|B		CSL (RBP-Jk) bound to DNAX-RAY DIFFRACTION2.215B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
91
2ERG|1|C+2ERG|1|D		Crystal Structure of Leu3 DNA-binding domain with a single H50C mutation complexed with a 15mer DNA duplexX-RAY DIFFRACTION3.1515B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
92
2ERE|1|C+2ERE|1|D		Crystal Structure of a Leu3 DNA-binding domain complexed with a 15mer DNA duplexX-RAY DIFFRACTION315B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
93
1CQT|1|M+1CQT|1|N		CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENTX-RAY DIFFRACTION3.215B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
94
1OCT|1|A+1OCT|1|B		CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULESX-RAY DIFFRACTION315B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
95
2BGW|1|C+2BGW|1|D		XPF from Aeropyrum pernix, complex with DNAX-RAY DIFFRACTION2.815B-form double helix,double helix,structureDNA replication/repair,enzyme,hydrolase,nuclease,regulatory
96
1CQT|1|O+1CQT|1|P		CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENTX-RAY DIFFRACTION3.215B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
97
1OWR|1|E+1OWR|1|F		CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-RAY DIFFRACTION315B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
98
1OWR|1|G+1OWR|1|H		CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-RAY DIFFRACTION315B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
99
1OWR|1|C+1OWR|1|D		CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-RAY DIFFRACTION315B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
100
1OWR|1|A+1OWR|1|B		CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNAX-RAY DIFFRACTION315B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
101
3BRF|1|B+3BRF|1|C		CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221X-RAY DIFFRACTION2.4715B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,cell signaling,immunoglobulin (Ig) fold,regulatory,transcription
102
2IVK|1|G+2IVK|1|H		Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNAX-RAY DIFFRACTION2.915double helix,structureenzyme,hydrolase,nuclease
103
2RDJ|1|F+2RDJ|1|E		Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsX-RAY DIFFRACTION2.215B-form double helix,double helix,structureenzyme,polymerase,transferase
104
2HHQ|1|C+2HHQ|1|B		O6-methyl-guanine:T pair in the polymerase-10 basepair positionX-RAY DIFFRACTION1.815B-form double helix,double helix,structureenzyme,polymerase,transferase
105
1U4B|1|C+1U4B|1|B		Extension of an adenine-8oxoguanine mismatchX-RAY DIFFRACTION1.615enzyme,polymerase,transferase
106
1NK8|1|C+1NK8|1|B		A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.X-RAY DIFFRACTION1.915B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
107
1NK0|1|C+1NK0|1|B		ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.715B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
108
1U48|1|C+1U48|1|B		Extension of a cytosine-8-oxoguanine base pairX-RAY DIFFRACTION2.115B-form double helix,double helix,structureenzyme,polymerase,transferase
109
1U47|1|C+1U47|1|B		cytosine-8-Oxoguanine base pair at the polymerase active siteX-RAY DIFFRACTION215B-form double helix,double helix,structureenzyme,polymerase,transferase
110
1U49|1|C+1U49|1|B		Adenine-8oxoguanine mismatch at the polymerase active siteX-RAY DIFFRACTION2.1515enzyme,polymerase,transferase
111
1U45|1|C+1U45|1|B		8oxoguanine at the pre-insertion site of the polymerase active siteX-RAY DIFFRACTION2.0115B-form double helix,double helix,structureenzyme,polymerase,transferase
112
1NK7|1|C+1NK7|1|B		GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.915B-form double helix,double helix,structureenzyme,polymerase,transferase
113
3MFI|1|T+3MFI|1|P		DNA Polymerase Eta in Complex With a cis-syn Thymidine DimerX-RAY DIFFRACTION1.7615B-form double helix,double helix,structureenzyme,polymerase,transferase
114
1BVO|1|D		DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNAX-RAY DIFFRACTION2.715DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
115
2CGP|1|C+2CGP|1|B		CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATEX-RAY DIFFRACTION2.215double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
116
3BQ0|1|T+3BQ0|1|P		Pre-insertion binary complex of Dbh DNA polymeraseX-RAY DIFFRACTION2.615B-form double helix,double helix,structureenzyme,polymerase,transferase
117
3BQ2|1|T+3BQ2|1|P		Post-insertion binary complex of Dbh DNA polymeraseX-RAY DIFFRACTION2.715B-form double helix,double helix,structureenzyme,polymerase,transferase
118
3BQ1|1|T+3BQ1|1|P		Insertion ternary complex of Dbh DNA polymeraseX-RAY DIFFRACTION2.715B-form double helix,double helix,structureenzyme,polymerase,transferase
119
1O3Q|1|C+1O3Q|1|B		PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXESX-RAY DIFFRACTION315double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
120
2IMW|1|T+2IMW|1|S		Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA PolymeraseX-RAY DIFFRACTION2.0515B-form double helix,double helix,structureenzyme,polymerase,transferase
121
1K7A|1|B+1K7A|1|C		Ets-1(331-440)+GGAG duplexX-RAY DIFFRACTION2.815B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
122
2NQJ|1|C+2NQJ|1|D		Crystal structure of Escherichia coli endonuclease IV (Endo IV) E261Q mutant bound to damaged DNAX-RAY DIFFRACTION2.4515B-form double helix,double helix,structureenzyme,hydrolase,nuclease

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