Equivalence class DNA_4.0_99481.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2BNZ|1|G+ 2BNZ|1|H (rep) | 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*GP*AP*TP*TP*AP*GP*C)-3', 5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3' | synthetic construct | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeats | X-ray diffraction | 2.6 | 2006-03-15 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 0.13 | 0.14 | 0.15 | 0.16 | 0.17 | 0.18 | 0.19 | 0.20 | 0.21 | 0.22 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-02-05 | 2011-02-12 | 2011-02-16 | 2011-02-19 | 2011-02-26 | 2011-03-05 | 2011-03-12 | 2011-03-19 | 2011-03-26 | 2011-04-02 | 2011-04-09 | 2011-04-11 | 2011-04-16 | 2011-04-23 | 2011-04-30 | 2011-05-07 | 2011-05-14 | 2011-05-21 | 2011-05-28 | 2011-06-04 | 2011-06-11 | 2011-06-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2BNZ|1|G+2BNZ|1|H | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeats | X-RAY DIFFRACTION | 2.6 | 18 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
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