Equivalence class DNA_4.0_97391.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3K0S|1|E+ 3K0S|1|F (rep) | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*C*AP*CP*T*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | Crystal structure of E.coli DNA mismatch repair protein MutS, D693N mutant, in complex with GT mismatched DNA | X-ray diffraction | 2.2 | 2010-02-16 | ||||
| 2 | 1W7A|1|E+ 1W7A|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP* AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP* CP*T)-3' | ATP bound MutS | X-ray diffraction | 2.27 | 2004-09-10 | ||||
| 3 | 1E3M|1|E+ 1E3M|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP* GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*CP*AP*CP* TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | Escherichia coli | The crystal structure of E. coli MutS binding to DNA with a G:T mismatch | X-ray diffraction | 2.2 | 2000-11-01 | |||
| 4 | 1OH6|1|E+ 1OH6|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*AP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP* CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*AP*TP*GP*GP* CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH | X-ray diffraction | 2.4 | 2003-08-08 | |||
| 5 | 1NG9|1|E+ 1NG9|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | E.coli MutS R697A: an ATPase-asymmetry mutant | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 6 | 1OH7|1|E+ 1OH7|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP *CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*GP*TP*GP*GP *CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH | X-ray diffraction | 2.5 | 2003-08-08 | |||
| 7 | 1OH5|1|E+ 1OH5|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*CP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP *CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*AP*TP*GP*GP *CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH | X-ray diffraction | 2.9 | 2003-08-08 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1NG9|1|E+1NG9|1|F | E.coli MutS R697A: an ATPase-asymmetry mutant | X-RAY DIFFRACTION | 2.6 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 2 | 1E3M|1|E+1E3M|1|F | The crystal structure of E. coli MutS binding to DNA with a G:T mismatch | X-RAY DIFFRACTION | 2.2 | 30 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
| 3 | 1W7A|1|E+1W7A|1|F | ATP bound MutS | X-RAY DIFFRACTION | 2.27 | 30 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
| 4 | 3K0S|1|E+3K0S|1|F | Crystal structure of E.coli DNA mismatch repair protein MutS, D693N mutant, in complex with GT mismatched DNA | X-RAY DIFFRACTION | 2.2 | 30 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
| 5 | 1OH7|1|E+1OH7|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH | X-RAY DIFFRACTION | 2.5 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 6 | 1OH6|1|E+1OH6|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH | X-RAY DIFFRACTION | 2.4 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 7 | 1OH5|1|E+1OH5|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH | X-RAY DIFFRACTION | 2.9 | 30 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
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