Equivalence class DNA_4.0_93002.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3HT3|1|C+ 3HT3|1|B (rep) | 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-ray diffraction | 1.7 | 2010-07-14 | ||||
| 2 | 3HT3|1|F+ 3HT3|1|E | 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-ray diffraction | 1.7 | 2010-07-14 | ||||
| 3 | 3HP6|1|C+ 3HP6|1|B | 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-ray diffraction | 1.81 | 2010-06-23 | ||||
| 4 | 3HP6|1|F+ 3HP6|1|E | 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-ray diffraction | 1.81 | 2010-06-23 | ||||
| 5 | 3EZ5|1|C+ 3EZ5|1|B | 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-ray diffraction | 1.9 | 2009-11-10 | ||||
| 6 | 3EZ5|1|F+ 3EZ5|1|E | 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-ray diffraction | 1.9 | 2009-11-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3HT3|1|C+3HT3|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 2 | 3HP6|1|C+3HP6|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.81 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 3 | 3HP6|1|F+3HP6|1|E | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.81 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 4 | 3HT3|1|F+3HT3|1|E | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 5 | 3EZ5|1|F+3EZ5|1|E | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-RAY DIFFRACTION | 1.9 | 12 | double helix,structure | enzyme,polymerase,transferase |
| 6 | 3EZ5|1|C+3EZ5|1|B | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-RAY DIFFRACTION | 1.9 | 12 | double helix,structure | enzyme,polymerase,transferase |
Coloring options: