Equivalence class DNA_4.0_86263.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2NNY|1|C+ 2NNY|1|D (rep) | 5'-D(*T*AP*GP*AP*CP*AP*GP*GP*AP*AP*GP*CP*AP*CP*TP*TP*CP*CP*TP*GP*GP*AP*G)-3', 5'-D(*A*CP*TP*CP*CP*AP*GP*GP*AP*AP*GP*TP*GP*CP*TP*TP*CP*CP*TP*GP*TP*CP*T)-3' | Crystal structure of the Ets1 dimer DNA complex. | X-ray diffraction | 2.58 | 2008-03-04 | ||||
2 | 3L1P|1|M+ 3L1P|1|N | DNA (5'-D(*AP*TP*CP*CP*AP*TP*TP*TP*GP*CP*CP*TP*TP*TP*CP*AP*AP*AP*TP*GP*TP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*AP*CP*AP*TP*TP*TP*GP*AP*AP*AP*GP*GP*CP*AP*AP*AP*TP*GP*GP*A)-3') | POU protein:DNA complex | X-ray diffraction | 2.8 | 2010-12-15 | ||||
3 | 3Q5F|1|C | DNA (5'-D(*AP*AP*TP*AP*AP*CP*TP*TP*AP*GP*CP*AP*AP*GP*CP*TP*AP*AP*TP*TP*AP*TP*A)-3') | Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA | X-ray diffraction | 2.96 | 2011-05-04 | ||||
4 | 3Q5F|1|D | DNA (5'-D(*TP*TP*AP*TP*AP*AP*TP*TP*AP*GP*CP*TP*TP*GP*CP*TP*AP*AP*GP*TP*TP*AP*T)-3') | Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA | X-ray diffraction | 2.96 | 2011-05-04 | ||||
5 | 1EJ9|1|C+ 1EJ9|1|D | DNA (5'-D(*C*AP*AP*AP*AP*AP*GP*AP*CP*TP*CP*AP*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3'), DNA (5'-D(*C*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*GP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3') | CRYSTAL STRUCTURE OF HUMAN TOPOISOMERASE I DNA COMPLEX | X-ray diffraction | 2.6 | 2000-08-03 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 2NNY|1|C+2NNY|1|D | Crystal structure of the Ets1 dimer DNA complex. | X-RAY DIFFRACTION | 2.58 | 23 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
2 | 3Q5F|1|D | Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA | X-RAY DIFFRACTION | 2.96 | 23 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
3 | 3Q5F|1|C | Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA | X-RAY DIFFRACTION | 2.96 | 23 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
4 | 1EJ9|1|C+1EJ9|1|D | CRYSTAL STRUCTURE OF HUMAN TOPOISOMERASE I DNA COMPLEX | X-RAY DIFFRACTION | 2.6 | 23 | B-form double helix,double helix,structure | enzyme,isomerase |
5 | 3L1P|1|M+3L1P|1|N | POU protein:DNA complex | X-RAY DIFFRACTION | 2.8 | 23 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
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