Equivalence class DNA_4.0_81758.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1CDW|1|B+ 1CDW|1|C (rep) | DNA (5'-D(*CP*TP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*AP*G)-3') | HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA | X-ray diffraction | 1.9 | 1996-12-23 | ||||
| 2 | 1VOL|1|C+ 1VOL|1|D | DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*C)-3') | TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX | X-ray diffraction | 2.7 | 1996-11-08 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1CDW|1|B+1CDW|1|C | HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA | X-RAY DIFFRACTION | 1.9 | 16 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription |
| 2 | 1VOL|1|C+1VOL|1|D | TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX | X-RAY DIFFRACTION | 2.7 | 16 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,enzyme,regulatory,transcription,transferase |
Coloring options: