Equivalence class DNA_4.0_77941.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2GIG|1|E+ 2GIG|1|F (rep) | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*GP*C)-3' | Alteration of sequence specificity of the type II restriction endonuclease HINCII through an indirect readout mechanism | X-ray diffraction | 1.83 | 2006-07-18 | ||||
| 2 | 3E40|1|E+ 3E40|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3') | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-ray diffraction | 2.1 | 2008-08-26 | ||||
| 3 | 3E3Y|1|E+ 3E3Y|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DTP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-ray diffraction | 2.13 | 2008-08-26 | ||||
| 4 | 2GIJ|1|E+ 2GIJ|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*GP*C)-3' | Q138F HincII bound to cognate DNA GTTAAC and Ca2+ | X-ray diffraction | 1.93 | 2006-07-18 | ||||
| 5 | 2GII|1|E+ 2GII|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*GP*C)-3' | Q138F HincII bound to cognate DNA GTTAAC | X-ray diffraction | 2.3 | 2006-07-18 | ||||
| 6 | 2GIH|1|E+ 2GIH|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*GP*C)-3' | Q138F HincII bound to cognate DNA GTCGAC and Ca2+ | X-ray diffraction | 2.5 | 2006-07-18 | ||||
| 7 | 3E41|1|E+ 3E41|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTCGAC and 5 mM Ca2+ | X-ray diffraction | 2.73 | 2008-08-26 | ||||
| 8 | 3E42|1|E+ 3E42|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized) | X-ray diffraction | 2.68 | 2008-08-26 | ||||
| 9 | 3E43|1|E+ 3E43|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DTP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTTAAC and cocrystallized with 2.5 mM MgCl2 | X-ray diffraction | 2.73 | 2008-08-26 | ||||
| 10 | 3E45|1|E+ 3E45|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DGP*DCP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+ | X-ray diffraction | 2.78 | 2008-08-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2GII|1|E+2GII|1|F | Q138F HincII bound to cognate DNA GTTAAC | X-RAY DIFFRACTION | 2.3 | 14 | double helix,structure | enzyme,hydrolase,nuclease |
| 2 | 3E43|1|E+3E43|1|F | Q138F HincII bound to GTTAAC and cocrystallized with 2.5 mM MgCl2 | X-RAY DIFFRACTION | 2.73 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 3 | 2GIJ|1|E+2GIJ|1|F | Q138F HincII bound to cognate DNA GTTAAC and Ca2+ | X-RAY DIFFRACTION | 1.93 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 4 | 3E3Y|1|E+3E3Y|1|F | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-RAY DIFFRACTION | 2.13 | 14 | double helix,structure | enzyme,hydrolase,nuclease |
| 5 | 3E40|1|E+3E40|1|F | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-RAY DIFFRACTION | 2.1 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 6 | 3E45|1|E+3E45|1|F | Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+ | X-RAY DIFFRACTION | 2.78 | 14 | double helix,structure | enzyme,hydrolase,nuclease |
| 7 | 3E41|1|E+3E41|1|F | Q138F HincII bound to GTCGAC and 5 mM Ca2+ | X-RAY DIFFRACTION | 2.73 | 14 | double helix,structure | enzyme,hydrolase,nuclease |
| 8 | 3E42|1|E+3E42|1|F | Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized) | X-RAY DIFFRACTION | 2.68 | 14 | double helix,structure | enzyme,hydrolase,nuclease |
| 9 | 2GIG|1|E+2GIG|1|F | Alteration of sequence specificity of the type II restriction endonuclease HINCII through an indirect readout mechanism | X-RAY DIFFRACTION | 1.83 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 10 | 2GIH|1|E+2GIH|1|F | Q138F HincII bound to cognate DNA GTCGAC and Ca2+ | X-RAY DIFFRACTION | 2.5 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
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