Equivalence class DNA_4.0_76568.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3OYM|1|C+ 3OYM|1|D (rep) | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the PFV N224H mutant intasome bound to manganese | X-ray diffraction | 2.02 | 2010-11-17 | ||||
| 2 | 3OYL|1|C+ 3OYL|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048 | X-ray diffraction | 2.54 | 2010-11-17 | ||||
| 3 | 3OYB|1|C+ 3OYB|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048 | X-ray diffraction | 2.54 | 2010-11-17 | ||||
| 4 | 3OY9|1|C+ 3OY9|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution | X-ray diffraction | 2.55 | 2010-10-20 | ||||
| 5 | 3OYG|1|C+ 3OYG|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG) | X-ray diffraction | 2.56 | 2010-11-17 | ||||
| 6 | 3OYC|1|C+ 3OYC|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICA | X-ray diffraction | 2.66 | 2010-11-17 | ||||
| 7 | 3OYF|1|C+ 3OYF|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810 | X-ray diffraction | 2.51 | 2010-11-17 | ||||
| 8 | 3OYD|1|C+ 3OYD|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160 | X-ray diffraction | 2.54 | 2010-11-17 | ||||
| 9 | 3OYA|1|C+ 3OYA|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolution | X-ray diffraction | 2.65 | 2010-10-20 | ||||
| 10 | 3OYN|1|C+ 3OYN|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048 | X-ray diffraction | 2.68 | 2010-11-17 | ||||
| 11 | 3L2R|1|C+ 3L2R|1|D | 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3' | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium | X-ray diffraction | 2.88 | 2010-02-09 | ||||
| 12 | 3OYK|1|C+ 3OYK|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the PFV S217H mutant intasome bound to manganese | X-ray diffraction | 2.72 | 2010-11-17 | ||||
| 13 | 3OYE|1|C+ 3OYE|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2 | X-ray diffraction | 2.74 | 2010-11-17 | ||||
| 14 | 3OYH|1|C+ 3OYH|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536 | X-ray diffraction | 2.74 | 2010-11-17 | ||||
| 15 | 3OS0|1|C+ 3OS0|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | PFV strand transfer complex (STC) at 2.81 A resolution | X-ray diffraction | 2.81 | 2010-11-17 | ||||
| 16 | 3OYJ|1|C+ 3OYJ|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048 | X-ray diffraction | 2.68 | 2010-11-17 | ||||
| 17 | 3OYI|1|C+ 3OYI|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | Crystal structure of the PFV S217Q mutant intasome in complex with manganese | X-ray diffraction | 2.72 | 2010-11-17 | ||||
| 18 | 3L2U|1|C+ 3L2U|1|D | 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3' | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir) | X-ray diffraction | 3.15 | 2010-02-09 | ||||
| 19 | 3L2W|1|C+ 3L2W|1|D | 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3' | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir) | X-ray diffraction | 3.2 | 2010-02-09 | ||||
| 20 | 3L2Q|1|C+ 3L2Q|1|D | 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3' | Crystal structure of the Prototype Foamy Virus (PFV) intasome in apo form | X-ray diffraction | 3.25 | 2010-02-09 | ||||
| 21 | 3L2V|1|C+ 3L2V|1|D | 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3' | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir) | X-ray diffraction | 3.2 | 2010-02-09 | ||||
| 22 | 3OS1|1|C+ 3OS1|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*(2DA))-3') | PFV target capture complex (TCC) at 2.97 A resolution | X-ray diffraction | 2.97 | 2010-11-17 | ||||
| 23 | 3OS2|1|C+ 3OS2|1|D | DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3') | PFV target capture complex (TCC) at 3.32 A resolution | X-ray diffraction | 3.32 | 2010-11-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3OYM|1|C+3OYM|1|D | Crystal structure of the PFV N224H mutant intasome bound to manganese | X-RAY DIFFRACTION | 2.02 | 19 | enzyme,recombinase | |
| 2 | 3OS1|1|C+3OS1|1|D | PFV target capture complex (TCC) at 2.97 A resolution | X-RAY DIFFRACTION | 2.97 | 19 | enzyme,recombinase | |
| 3 | 3OS2|1|C+3OS2|1|D | PFV target capture complex (TCC) at 3.32 A resolution | X-RAY DIFFRACTION | 3.32 | 19 | enzyme,recombinase | |
| 4 | 3OS0|1|C+3OS0|1|D | PFV strand transfer complex (STC) at 2.81 A resolution | X-RAY DIFFRACTION | 2.81 | 19 | enzyme,recombinase | |
| 5 | 3L2Q|1|C+3L2Q|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in apo form | X-RAY DIFFRACTION | 3.25 | 19 | enzyme,recombinase | |
| 6 | 3L2R|1|C+3L2R|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium | X-RAY DIFFRACTION | 2.88 | 19 | enzyme,recombinase | |
| 7 | 3OYJ|1|C+3OYJ|1|D | Crystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048 | X-RAY DIFFRACTION | 2.68 | 19 | enzyme,recombinase | |
| 8 | 3OYG|1|C+3OYG|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG) | X-RAY DIFFRACTION | 2.56 | 19 | enzyme,recombinase | |
| 9 | 3OYB|1|C+3OYB|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048 | X-RAY DIFFRACTION | 2.54 | 19 | enzyme,recombinase | |
| 10 | 3OYE|1|C+3OYE|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2 | X-RAY DIFFRACTION | 2.74 | 19 | enzyme,recombinase | |
| 11 | 3OYD|1|C+3OYD|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160 | X-RAY DIFFRACTION | 2.54 | 19 | enzyme,recombinase | |
| 12 | 3OYF|1|C+3OYF|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810 | X-RAY DIFFRACTION | 2.51 | 19 | enzyme,recombinase | |
| 13 | 3OYH|1|C+3OYH|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536 | X-RAY DIFFRACTION | 2.74 | 19 | enzyme,recombinase | |
| 14 | 3OYA|1|C+3OYA|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolution | X-RAY DIFFRACTION | 2.65 | 19 | enzyme,recombinase | |
| 15 | 3OYC|1|C+3OYC|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICA | X-RAY DIFFRACTION | 2.66 | 19 | enzyme,recombinase | |
| 16 | 3OY9|1|C+3OY9|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution | X-RAY DIFFRACTION | 2.55 | 19 | enzyme,recombinase | |
| 17 | 3OYI|1|C+3OYI|1|D | Crystal structure of the PFV S217Q mutant intasome in complex with manganese | X-RAY DIFFRACTION | 2.72 | 19 | enzyme,recombinase | |
| 18 | 3OYK|1|C+3OYK|1|D | Crystal structure of the PFV S217H mutant intasome bound to manganese | X-RAY DIFFRACTION | 2.72 | 19 | enzyme,recombinase | |
| 19 | 3OYN|1|C+3OYN|1|D | Crystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048 | X-RAY DIFFRACTION | 2.68 | 19 | enzyme,recombinase | |
| 20 | 3OYL|1|C+3OYL|1|D | Crystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048 | X-RAY DIFFRACTION | 2.54 | 19 | enzyme,recombinase | |
| 21 | 3L2V|1|C+3L2V|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir) | X-RAY DIFFRACTION | 3.2 | 19 | enzyme,recombinase | |
| 22 | 3L2U|1|C+3L2U|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir) | X-RAY DIFFRACTION | 3.15 | 19 | enzyme,recombinase | |
| 23 | 3L2W|1|C+3L2W|1|D | Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir) | X-RAY DIFFRACTION | 3.2 | 19 | enzyme,recombinase |
Coloring options: