Equivalence class DNA_4.0_71834.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2VE9|1|I+ 2VE9|1|J (rep) | 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3' | Pseudomonas aeruginosa | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-ray diffraction | 1.9 | 2008-09-09 | |||
| 2 | 2VE9|1|K+ 2VE9|1|L | 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3' | Pseudomonas aeruginosa | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-ray diffraction | 1.9 | 2008-09-09 | |||
| 3 | 3OHB|1|T+ 3OHB|1|P | 5'-D(*TP*AP*AP*TP*GP*(8OG)P*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3' | Yeast DNA polymerase eta extending from an 8-oxoG lesion | X-ray diffraction | 2 | 2010-12-22 | ||||
| 4 | 1L3S|1|C+ 1L3S|1|B | 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*G)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA. | X-ray diffraction | 1.7 | 2003-03-25 | ||||
| 5 | 2HHV|1|C+ 2HHV|1|B | 5'-D(*GP*TP*AP*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*TP*G)-3' | T:O6-methyl-guanine in the polymerase-2 basepair position | X-ray diffraction | 1.55 | 2006-12-12 | ||||
| 6 | 3BS1|1|B+ 3BS1|1|C | DNA (5'-D(*DTP*DTP*DTP*DAP*DAP*DCP*DAP*DGP*DTP*DTP*DAP*DAP*DGP*(BRU)P*DAP*DT)-3'), DNA (5'-D(*DAP*DAP*(BRU)P*DAP*DCP*DTP*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DTP*DAP*DA)-3') | Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding | X-ray diffraction | 1.6 | 2008-04-08 | ||||
| 7 | 3LAP|1|G+ 3LAP|1|H | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-ray diffraction | 2.15 | 2010-05-05 | ||||
| 8 | 3LAP|1|I+ 3LAP|1|J | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-ray diffraction | 2.15 | 2010-05-05 | ||||
| 9 | 3LAP|1|K+ 3LAP|1|L | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-ray diffraction | 2.15 | 2010-05-05 | ||||
| 10 | 2FMP|1|T+ 2FMP|1|P+ 2FMP|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | DNA Polymerase beta with a terminated gapped DNA substrate and ddCTP with sodium in the catalytic site | X-ray diffraction | 1.65 | 2006-04-25 | ||||
| 11 | 1L3T|1|C+ 1L3T|1|B | 5'-D(*GP*AP*CP*G*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue | X-ray diffraction | 1.7 | 2003-03-25 | ||||
| 12 | 3ISD|1|T+ 3ISD|1|P+ 3ISD|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | synthetic construct | Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch | X-ray diffraction | 2.6 | 2009-09-15 | |||
| 13 | 1L3V|1|C+ 1L3V|1|B | 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*CP*GP*TP*C)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 15 base pairs of duplex DNA following addition of dTTP, dATP, dCTP, and dGTP residues. | X-ray diffraction | 1.71 | 2003-03-25 | ||||
| 14 | 3JPQ|1|T+ 3JPQ|1|P+ 3JPQ|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate | X-ray diffraction | 1.9 | 2010-06-02 | ||||
| 15 | 1NK5|1|C+ 1NK5|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2.1 | 2004-03-30 | ||||
| 16 | 3LAJ|1|G+ 3LAJ|1|H | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-ray diffraction | 2.306 | 2010-05-05 | ||||
| 17 | 3LAJ|1|I+ 3LAJ|1|J | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-ray diffraction | 2.306 | 2010-05-05 | ||||
| 18 | 3LAJ|1|K+ 3LAJ|1|L | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-ray diffraction | 2.306 | 2010-05-05 | ||||
| 19 | 1L5U|1|C+ 1L5U|1|B | 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*C)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 12 base pairs of duplex DNA following addition of a dTTP, a dATP, and a dCTP residue. | X-ray diffraction | 1.95 | 2003-03-25 | ||||
| 20 | 1NK4|1|C+ 1NK4|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 1.6 | 2004-03-30 | ||||
| 21 | 2AQ4|1|T+ 2AQ4|1|P | 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*C)-3' | Ternary complex of the catalytic core of REV1 with DNA and dCTP. | X-ray diffraction | 2.32 | 2005-10-04 | ||||
| 22 | 1L1T|1|B+ 1L1T|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) Bound to Abasic-Site Containing DNA | X-ray diffraction | 1.8 | 2002-06-14 | ||||
| 23 | 1L3U|1|C+ 1L3U|1|B | 5'-D(*GP*AP*C*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 11 base pairs of duplex DNA following addition of a dTTP and a dATP residue. | X-ray diffraction | 1.8 | 2003-03-25 | ||||
| 24 | 2HHU|1|C+ 2HHU|1|B | 5'-D(*GP*TP*AP*CP*(6OG)P*GP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*CP*C)-3' | C:O6-methyl-guanine in the polymerase postinsertion site (-1 basepair position) | X-ray diffraction | 1.8 | 2006-12-12 | ||||
| 25 | 1L2D|1|B+ 1L2D|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex | X-ray diffraction | 2 | 2002-06-14 | ||||
| 26 | 3M8R|1|C+ 3M8R|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP | X-ray diffraction | 2 | 2010-07-07 | ||||
| 27 | 3IAY|1|T+ 3IAY|1|P | 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3' | Ternary complex of DNA polymerase delta | X-ray diffraction | 2 | 2009-09-22 | ||||
| 28 | 3ISC|1|T+ 3ISC|1|P+ 3ISC|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | synthetic construct | Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA | X-ray diffraction | 2 | 2009-09-15 | |||
| 29 | 2HHT|1|C+ 2HHT|1|B | 5'-D(*GP*TP*AP*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*CP*G)-3' | C:O6-methyl-guanine pair in the polymerase-2 basepair position | X-ray diffraction | 2.05 | 2006-12-12 | ||||
| 30 | 1L1Z|1|B+ 1L1Z|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) Covalent-DNA Intermediate | X-ray diffraction | 1.7 | 2002-06-14 | ||||
| 31 | 1NKE|1|C+ 1NKE|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-ray diffraction | 1.8 | 2004-03-30 | ||||
| 32 | 2FMS|1|T+ 2FMS|1|P+ 2FMS|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site | X-ray diffraction | 2 | 2006-04-25 | ||||
| 33 | 3JPS|1|T+ 3JPS|1|P+ 3JPS|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate | X-ray diffraction | 2 | 2010-06-02 | ||||
| 34 | 3M8S|1|C+ 3M8S|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP | X-ray diffraction | 2.2 | 2010-07-07 | ||||
| 35 | 1N48|1|C+ 1N48|1|B | 5'-D(*CP*AP*(3DR)P*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3' | Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion | X-ray diffraction | 2.2 | 2004-02-24 | ||||
| 36 | 2F5O|1|B+ 2F5O|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*GP*GP*AP*TP*CP*TP*AP*CP*C)-3' | MutM crosslinked to undamaged DNA sampling G:C base pair IC3 | X-ray diffraction | 2.05 | 2006-03-07 | ||||
| 37 | 3JPN|1|T+ 3JPN|1|P+ 3JPN|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dichloro methylene triphosphate | X-ray diffraction | 2.15 | 2010-06-02 | ||||
| 38 | 2EWJ|1|B+ 2EWJ|1|C | 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3', 5'-D(*TP*G*AP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3' | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-ray diffraction | 2.7 | 2006-05-03 | ||||
| 39 | 2E42|1|C+ 2E42|1|D | DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3'), DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3') | Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment | X-ray diffraction | 1.8 | 2007-12-18 | ||||
| 40 | 2F5N|1|B+ 2F5N|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3' | MutM crosslinked to undamaged DNA sampling A:T base pair IC1 | X-ray diffraction | 2 | 2006-03-07 | ||||
| 41 | 1NJY|1|C+ 1NJY|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2 | 2004-03-30 | ||||
| 42 | 2F5P|1|C+ 2F5P|1|D | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*AP*GP*TP*CP*TP*AP*CP*C)-3' | MutM crosslinked to undamaged DNA sampling A:T base pair IC2 | X-ray diffraction | 2 | 2006-03-07 | ||||
| 43 | 1NJZ|1|C+ 1NJZ|1|B | DNA TEMPLATE STRAND, DNA PRIMER STRAND | CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2 | 2004-03-30 | ||||
| 44 | 3MBY|1|T+ 3MBY|1|P+ 3MBY|1|D | DNA (5'-D(P*GP*TP*CP*GP*G)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3'), DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | Ternary complex of DNA Polymerase BETA with template base A and 8oxodGTP in the active site with a dideoxy terminated primer | X-ray diffraction | 2 | 2010-06-09 | ||||
| 45 | 1TV9|1|T+ 1TV9|1|P+ 1TV9|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE | X-ray diffraction | 2 | 2004-11-23 | ||||
| 46 | 3JPO|1|T+ 3JPO|1|P+ 3JPO|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate | X-ray diffraction | 2 | 2010-06-02 | ||||
| 47 | 1L2C|1|B+ 1L2C|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex | X-ray diffraction | 2.2 | 2002-06-14 | ||||
| 48 | 2FMQ|1|B+ 2FMQ|1|C+ 2FMQ|1|D | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Sodium in active site of DNA Polymerase Beta | X-ray diffraction | 2.2 | 2006-04-25 | ||||
| 49 | 3LWL|1|C+ 3LWL|1|B | DNA (5'-D(*AP*AP*AP*(3DR)P*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DA))-3') | Structure of Klenow fragment of Taq polymerase in complex with an abasic site | X-ray diffraction | 2.25 | 2010-05-05 | ||||
| 50 | 1ZJN|1|T+ 1ZJN|1|P+ 1ZJN|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', d(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP | X-ray diffraction | 2.61 | 2005-08-16 | ||||
| 51 | 1ZJM|1|T+ 1ZJM|1|P+ 1ZJM|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', d(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus | X-ray diffraction | 2.1 | 2005-08-16 | ||||
| 52 | 3JPR|1|T+ 3JPR|1|P+ 3JPR|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dimethyl methylene triphosphate | X-ray diffraction | 2.1 | 2010-06-02 | ||||
| 53 | 2GEQ|1|C+ 2GEQ|1|D | 5'-D(*GP*CP*GP*TP*GP*AP*GP*CP*AP*TP*GP*CP*TP*CP*AP*C)-3' | Crystal Structure of a p53 Core Dimer Bound to DNA | X-ray diffraction | 2.3 | 2006-05-23 | ||||
| 54 | 3JPT|1|T+ 3JPT|1|P+ 3JPT|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate | X-ray diffraction | 2.15 | 2010-06-02 | ||||
| 55 | 2HW3|1|C+ 2HW3|1|B | 5'-D(*GP*TP*A*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*T)-3' | T:O6-methyl-guanine pair in the polymerase postinsertion site (-1 basepair position) | X-ray diffraction | 1.98 | 2006-12-12 | ||||
| 56 | 1N4L|1|B+ 1N4L|1|D | 5'-D(*CP*TP*TP*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*G)-3' | A DNA analogue of the polypurine tract of HIV-1 | X-ray diffraction | 2 | 2003-06-24 | ||||
| 57 | 3MFH|1|T+ 3MFH|1|P | 5'-D(*TP*AP*AP*TP*TP*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3' | DNA Polymerase Eta in Complex With Undamaged DNA | X-ray diffraction | 2 | 2010-06-23 | ||||
| 58 | 2NOB|1|B+ 2NOB|1|C | 5'-D(*T*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3' | Structure of catalytically inactive H270A human 8-oxoguanine glycosylase crosslinked to 8-oxoguanine DNA | X-ray diffraction | 2.1 | 2006-11-21 | ||||
| 59 | 2PXI|1|T+ 2PXI|1|P+ 2PXI|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monofluoromethylene triphosphate | X-ray diffraction | 2.1 | 2008-01-08 | ||||
| 60 | 3ERE|1|A+ 3ERE|1|B | 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DAP*DAP*DCP*DGP*DAP*DTP*DGP*DCP*DAP*DA)-3', 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DCP*DGP*DTP*DTP*DAP*DTP*DGP*DCP*DAP*DA)-3' | Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator | X-ray diffraction | 2.5 | 2008-10-14 | ||||
| 61 | 2F5Q|1|B+ 2F5Q|1|C | 5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3' | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2 | X-ray diffraction | 2.35 | 2006-03-07 | ||||
| 62 | 3GDX|1|T+ 3GDX|1|P+ 3GDX|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Dna polymerase beta with a gapped DND substrate and dTMP(CF2)PP | X-ray diffraction | 2.2 | 2009-05-05 | ||||
| 63 | 2FVP|1|B | 5'-D(*TP*TP*TP*CP*AP*TP*TP*GP*CP*AP*AP*TP*GP*AP*AP*A)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.25 | 2006-12-12 | ||||
| 64 | 3CO6|1|A+ 3CO6|1|B | DNA (5'-D(*DTP*DGP*DGP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DAP*DCP*DCP*DTP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DAP*DGP*DGP*DTP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DCP*DCP*DA)-3') | Crystal Structure of FoxO1 DBD Bound to DBE1 DNA | X-ray diffraction | 2.1 | 2008-09-16 | ||||
| 65 | 2E43|1|C+ 2E43|1|D | DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3'), DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3') | Crystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to A High Affinity DNA fragment | X-ray diffraction | 2.1 | 2007-12-18 | ||||
| 66 | 3JPP|1|T+ 3JPP|1|P+ 3JPP|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-MonoMethyl Methylene triphosphate | X-ray diffraction | 2.1 | 2010-06-02 | ||||
| 67 | 2FVQ|1|B | 5'-D(*CP*TP*TP*TP*CP*AP*TP*TP*AP*AP*TP*GP*AP*AP*AP*G)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.3 | 2006-12-12 | ||||
| 68 | 2WT7|1|C+ 2WT7|1|D | MODIFIED T-MARE MOTIF | synthetic construct | Crystal structure of the bZIP heterodimeric complex MafB:cFos bound to DNA | X-ray diffraction | 2.3 | 2010-09-29 | |||
| 69 | 3OSP|1|T | 5'-D(*TP*AP*AP*(3DR)P*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Structure of rev1 | X-ray diffraction | 2.5 | 2011-04-13 | ||||
| 70 | 3C2M|1|T+ 3C2M|1|P+ 3C2M|1|D | DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3'), DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DGP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3') | Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site | X-ray diffraction | 2.15 | 2008-05-20 | ||||
| 71 | 2F5S|1|B+ 2F5S|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3' | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1 | X-ray diffraction | 2.35 | 2006-03-07 | ||||
| 72 | 3ISB|1|T+ 3ISB|1|P+ 3ISB|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Binary complex of human DNA polymerase beta with a gapped DNA | X-ray diffraction | 2 | 2009-09-15 | ||||
| 73 | 3COA|1|A+ 3COA|1|B | DNA (5'-D(*DTP*DGP*DGP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DAP*DGP*DCP*DAP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DCP*DCP*DA)-3') | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-ray diffraction | 2.2 | 2008-09-16 | ||||
| 74 | 2FVR|1|B | 5'-D(*TP*CP*TP*TP*TP*CP*AP*TP*AP*TP*GP*AP*AP*AP*GP*A)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.2 | 2006-12-12 | ||||
| 75 | 3JTG|1|B+ 3JTG|1|C | DNA (5'-D(*GP*AP*GP*GP*AP*GP*TP*TP*TP*CP*CP*TP*GP*TP*TP*T)-3'), DNA (5'-D(*CP*AP*AP*AP*CP*AP*GP*GP*AP*AP*AP*CP*TP*CP*CP*T)-3') | Crystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA | X-ray diffraction | 2.2 | 2010-01-12 | ||||
| 76 | 3COA|1|D+ 3COA|1|E | DNA (5'-D(*DTP*DGP*DGP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DAP*DGP*DCP*DAP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DCP*DCP*DA)-3') | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-ray diffraction | 2.2 | 2008-09-16 | ||||
| 77 | 1L2B|1|B+ 1L2B|1|C+ 1L2B|1|D | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) DNA End-Product Structure | X-ray diffraction | 2.4 | 2002-06-14 | ||||
| 78 | 2C6Y|1|C+ 2C6Y|1|D | INTERLEUKIN 2 PROMOTOR | Homo sapiens | Crystal structure of interleukin enhancer-binding factor 1 bound to DNA | X-ray diffraction | 2.4 | 2006-04-18 | |||
| 79 | 1LQ1|1|E+ 1LQ1|1|F | 5'-D(*TP*TP*CP*GP*TP*GP*TP*CP*GP*AP*AP*TP*TP*TP*TP*G)-3', 5'-D(*AP*CP*AP*AP*AP*AP*TP*TP*CP*GP*AP*CP*AP*CP*GP*A)-3' | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-ray diffraction | 2.3 | 2002-08-23 | ||||
| 80 | 1LQ1|1|G+ 1LQ1|1|H | 5'-D(*TP*TP*CP*GP*TP*GP*TP*CP*GP*AP*AP*TP*TP*TP*TP*G)-3', 5'-D(*AP*CP*AP*AP*AP*AP*TP*TP*CP*GP*AP*CP*AP*CP*GP*A)-3' | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-ray diffraction | 2.3 | 2002-08-23 | ||||
| 81 | 1S0M|1|D+ 1S0M|1|C | 5'-D(P*AP*TP*AP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*CP*A)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*T)-3' | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-ray diffraction | 2.7 | 2004-03-30 | ||||
| 82 | 1S0M|1|F+ 1S0M|1|E | 5'-D(P*AP*TP*AP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*CP*A)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*T)-3' | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-ray diffraction | 2.7 | 2004-03-30 | ||||
| 83 | 2FVS|1|B | 5'-D(*CP*AP*CP*AP*AP*TP*GP*AP*TP*CP*AP*TP*TP*GP*TP*G)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.35 | 2006-12-12 | ||||
| 84 | 2RDJ|1|D+ 2RDJ|1|C | DNA (5'-D(P*DTP*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3'), DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3') | Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms | X-ray diffraction | 2.2 | 2008-06-24 | ||||
| 85 | 3C2K|1|T+ 3C2K|1|P+ 3C2K|1|D | DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3'), DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3') | DNA POLYMERASE BETA with a gapped DNA substrate and DUMPNPP with Manganese in the active site | X-ray diffraction | 2.4 | 2008-05-20 | ||||
| 86 | 1RYR|1|C+ 1RYR|1|B | 5'-D(*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3' | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-ray diffraction | 2.28 | 2004-02-10 | ||||
| 87 | 3IGC|1|D+ 3IGC|1|B+ 3IGC|1|C | 5'-D(*GP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3', 5'-D(*AP*TP*TP*CP*C)-3', 5'-D(*CP*GP*GP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3' | Smallpox virus topoisomerase-DNA transition state | X-ray diffraction | 2.1 | 2010-03-02 | ||||
| 88 | 1JXL|1|T+ 1JXL|1|P | 5'-D(*T*TP*CP*GP*AP*AP*(BRU)P*CP*CP*TP*(BRU)P*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3' | Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-ray diffraction | 2.1 | 2001-10-05 | ||||
| 89 | 3N7B|1|D+ 3N7B|1|C | DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)-3') | SgrAI bound to secondary site DNA and Ca(II) | X-ray diffraction | 2.65 | 2010-11-24 | ||||
| 90 | 3GQC|1|F+ 3GQC|1|E | 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 2009-05-19 | ||||
| 91 | 3GQC|1|H+ 3GQC|1|G | 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 2009-05-19 | ||||
| 92 | 3GQC|1|J+ 3GQC|1|I | 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 2009-05-19 | ||||
| 93 | 3GQC|1|L+ 3GQC|1|K | 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 2009-05-19 | ||||
| 94 | 2I06|1|B+ 2I06|1|C | 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3', 5'-D(*TP*G*AP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3' | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-ray diffraction | 2.2 | 2007-08-21 | ||||
| 95 | 1TVA|1|T+ 1TVA|1|P+ 1TVA|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE THYMIDINE AND INCOMING CYTIDINE | X-ray diffraction | 2.6 | 2004-11-23 | ||||
| 96 | 3OA6|1|C+ 3OA6|1|D | DNA (5'-D(*GP*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3') | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-ray diffraction | 2.35 | 2010-08-18 | ||||
| 97 | 3OA6|1|E+ 3OA6|1|F | DNA (5'-D(*GP*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3') | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-ray diffraction | 2.35 | 2010-08-18 | ||||
| 98 | 3F27|1|A+ 3F27|1|B | DNA (5'-D(*DGP*DTP*DCP*DTP*DCP*DTP*DAP*DTP*DTP*DGP*DTP*DCP*DCP*DTP*DGP*DG)-3'), DNA (5'-D(*DCP*DCP*DAP*DGP*DGP*DAP*DCP*DAP*DAP*DTP*DAP*DGP*DAP*DGP*DAP*DC)-3') | Structure of Sox17 Bound to DNA | X-ray diffraction | 2.75 | 2009-04-07 | ||||
| 99 | 2QL2|1|E+ 2QL2|1|F | DNA (5'-D(*DTP*DAP*DGP*DGP*DCP*DCP*DAP*DTP*DCP*DTP*DGP*DGP*DTP*DCP*DCP*DT)-3'), DNA (5'-D(*DAP*DGP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DTP*DGP*DGP*DCP*DCP*DTP*DA)-3') | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-ray diffraction | 2.5 | 2008-11-04 | ||||
| 100 | 2QL2|1|G+ 2QL2|1|H | DNA (5'-D(*DTP*DAP*DGP*DGP*DCP*DCP*DAP*DTP*DCP*DTP*DGP*DGP*DTP*DCP*DCP*DT)-3'), DNA (5'-D(*DAP*DGP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DTP*DGP*DGP*DCP*DCP*DTP*DA)-3') | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-ray diffraction | 2.5 | 2008-11-04 | ||||
| 101 | 3LK9|1|T+ 3LK9|1|P+ 3LK9|1|D | DNA (5'-D(P*GP*TP*CP*GP*G)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P | X-ray diffraction | 2.5 | 2011-01-12 | ||||
| 102 | 3C2L|1|T+ 3C2L|1|P+ 3C2L|1|D | DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3'), DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DCP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3') | Ternary complex of DNA POLYMERASE BETA with a C:DAPCPP mismatch in the active site | X-ray diffraction | 2.6 | 2008-05-20 | ||||
| 103 | 2IVK|1|I+ 2IVK|1|J | 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*TP*C)-3' | synthetic construct | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-ray diffraction | 2.9 | 2007-01-02 | |||
| 104 | 3CO7|1|A+ 3CO7|1|B | DNA (5'-D(*DTP*DCP*DTP*DTP*DGP*DTP*DTP*DTP*DAP*DCP*DAP*DTP*DTP*DTP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DAP*DAP*DAP*DTP*DGP*DTP*DAP*DAP*DAP*DCP*DAP*DAP*DGP*DA)-3') | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-ray diffraction | 2.91 | 2008-09-16 | ||||
| 105 | 3CO7|1|D+ 3CO7|1|E | DNA (5'-D(*DTP*DCP*DTP*DTP*DGP*DTP*DTP*DTP*DAP*DCP*DAP*DTP*DTP*DTP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DAP*DAP*DAP*DTP*DGP*DTP*DAP*DAP*DAP*DCP*DAP*DAP*DGP*DA)-3') | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-ray diffraction | 2.91 | 2008-09-16 | ||||
| 106 | 3N78|1|D+ 3N78|1|C | DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)-3') | SgrAI bound to Secondary Site DNA and Mg(II) | X-ray diffraction | 2.95 | 2010-11-24 | ||||
| 107 | 3OQM|1|B+ 3OQM|1|E | 5'-D(*TP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*TP*AP*CP*AP*A)-3', 5'-D(*TP*TP*GP*TP*AP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*A)-3' | Bacillus subtilis | structure of ccpa-hpr-ser46p-ackA2 complex | X-ray diffraction | 2.96 | 2010-12-08 | |||
| 108 | 1RZR|1|B+ 1RZR|1|E | 5'-D(*CP*TP*GP*TP*TP*AP*GP*CP*GP*CP*TP*TP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*AP*AP*GP*CP*GP*CP*TP*AP*AP*CP*AP*G)-3' | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-ray diffraction | 2.8 | 2004-10-12 | ||||
| 109 | 1RZR|1|H+ 1RZR|1|R | 5'-D(*CP*TP*GP*AP*AP*AP*GP*CP*GP*CP*TP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*TP*AP*GP*CP*GP*CP*TP*TP*TP*CP*AP*G)-3' | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-ray diffraction | 2.8 | 2004-10-12 | ||||
| 110 | 1CIT|1|B+ 1CIT|1|C | DNA (5'-D(*CP*CP*GP*AP*AP*AP*AP*GP*GP*TP*CP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*GP*AP*CP*CP*TP*TP*TP*TP*CP*GP*G)-3') | DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B | X-ray diffraction | 2.7 | 1999-05-03 | ||||
| 111 | 1XSD|1|B | 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3' | Crystal structure of the BlaI repressor in complex with DNA | X-ray diffraction | 2.7 | 2005-03-29 | ||||
| 112 | 1YFH|1|D+ 1YFH|1|E | 5'-D(*GP*TP*GP*GP*AP*TP*GP*(XCY)P*GP*TP*GP*TP*AP*GP*GP*T)-3', 5'-D(*CP*CP*TP*AP*CP*AP*CP*AP*CP*AP*TP*CP*CP*AP*CP*A)-3' | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-ray diffraction | 3.01 | 2005-12-13 | ||||
| 113 | 1YFH|1|F+ 1YFH|1|G | 5'-D(*GP*TP*GP*GP*AP*TP*GP*(XCY)P*GP*TP*GP*TP*AP*GP*GP*T)-3', 5'-D(*CP*CP*TP*AP*CP*AP*CP*AP*CP*AP*TP*CP*CP*AP*CP*A)-3' | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-ray diffraction | 3.01 | 2005-12-13 | ||||
| 114 | 2WTU|1|E+ 2WTU|1|F | DNA | synthetic construct | Crystal structure of Escherichia coli MutS in complex with a 16 basepair oligo containing an A.A mismatch. | X-ray diffraction | 3.4 | 2010-02-09 | |||
| 115 | 3OQN|1|B+ 3OQN|1|E | 5'-D(*AP*TP*GP*GP*TP*AP*CP*CP*GP*CP*TP*TP*TP*CP*AP*A)-3', 5'-D(*TP*TP*GP*AP*AP*AP*GP*CP*GP*GP*TP*AP*CP*CP*AP*T)-3' | Bacillus subtilis | Structure of ccpa-hpr-ser46-p-gntr-down cre | X-ray diffraction | 3.3 | 2010-12-08 | |||
| 116 | 2I05|1|B+ 2I05|1|C | 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3', 5'-D(*TP*AP*GP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3' | Escherichia Coli Replication Terminator Protein (Tus) Complexed With TerA DNA | X-ray diffraction | 2.6 | 2007-08-21 | ||||
| 117 | 1ZVV|1|O | DNA recognition strand CRE | Crystal structure of a ccpa-crh-dna complex | X-ray diffraction | 2.98 | 2006-02-07 | ||||
| 118 | 1ZVV|1|R | DNA recognition strand CRE | Crystal structure of a ccpa-crh-dna complex | X-ray diffraction | 2.98 | 2006-02-07 | ||||
| 119 | 1ZVV|1|T | DNA recognition strand CRE | Crystal structure of a ccpa-crh-dna complex | X-ray diffraction | 2.98 | 2006-02-07 | ||||
| 120 | 3MFK|1|C+ 3MFK|1|D | stromelysin-1 promoter DNA | Ets1 complex with stromelysin-1 promoter DNA | X-ray diffraction | 3 | 2010-08-18 | ||||
| 121 | 2QNF|1|C+ 2QNF|1|D | DNA (5'-D(*DCP*DAP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DCP*DTP*DCP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DTP*DG)-3') | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-ray diffraction | 3 | 2008-01-29 | ||||
| 122 | 2QNF|1|E+ 2QNF|1|F | DNA (5'-D(*DCP*DGP*DGP*DCP*DTP*DCP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DTP*DG)-3'), DNA (5'-D(*DCP*DAP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP*DGP*DC)-3') | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-ray diffraction | 3 | 2008-01-29 | ||||
| 123 | 2NTZ|1|E+ 2NTZ|1|U | 5'-D(*CP*GP*TP*GP*AP*AP*AP*TP*CP*GP*CP*CP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*GP*GP*CP*GP*AP*TP*TP*TP*CP*AP*CP*G)-3' | Structure of a ParB-DNA complex reveals a double B-box interaction | X-ray diffraction | 3.35 | 2007-02-20 | ||||
| 124 | 2NTZ|1|W+ 2NTZ|1|Y | 5'-D(*TP*CP*GP*TP*GP*GP*CP*GP*AP*TP*TP*TP*CP*AP*CP*G)-3', 5'-D(*CP*GP*TP*GP*AP*AP*AP*TP*CP*GP*CP*CP*AP*CP*GP*A)-3' | Structure of a ParB-DNA complex reveals a double B-box interaction | X-ray diffraction | 3.35 | 2007-02-20 | ||||
| 125 | 2D45|1|E+ 2D45|1|F | 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3' | Crystal structure of the MecI-mecA repressor-operator complex | X-ray diffraction | 3.8 | 2005-10-25 | ||||
| 126 | 2D45|1|G+ 2D45|1|H | 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3' | Crystal structure of the MecI-mecA repressor-operator complex | X-ray diffraction | 3.8 | 2005-10-25 | ||||
| 127 | 1DFM|1|C+ 1DFM|1|D | DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-ray diffraction | 1.5 | 2000-02-21 | ||||
| 128 | 1DP7|1|D | DNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*(BRU)P*GP*GP*TP*AP*AP*CP*G)-3') | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-ray diffraction | 1.5 | 2000-03-06 | ||||
| 129 | 3G9M|1|C+ 3G9M|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:Sgk 16bp complex-44 | X-ray diffraction | 1.61 | 2009-04-21 | ||||
| 130 | 3GPU|1|B+ 3GPU|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex | X-ray diffraction | 1.62 | 2009-11-10 | ||||
| 131 | 3FYL|1|C+ 3FYL|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:CGT complex | X-ray diffraction | 1.63 | 2009-04-21 | ||||
| 132 | 3G9O|1|C+ 3G9O|1|D | DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3') | GR DNA-binding domain:Sgk 16bp complex-9 | X-ray diffraction | 1.65 | 2009-04-21 | ||||
| 133 | 3G9P|1|C+ 3G9P|1|D | DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3') | GR DNA binding domain:Sgk 16bp complex-7 | X-ray diffraction | 1.652 | 2009-04-14 | ||||
| 134 | 3GQ4|1|B+ 3GQ4|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Lesion Recognition Complex 5 (LRC5) | X-ray diffraction | 1.7 | 2009-11-10 | ||||
| 135 | 1D2I|1|C+ 1D2I|1|D | DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') | CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER | X-ray diffraction | 1.7 | 2000-02-21 | ||||
| 136 | 3JR5|1|B+ 3JR5|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(OGX)P*AP*GP*TP*CP*TP*AP*CP*C)-3') | MutM lesion recognition control complex with N174C crosslinking site | X-ray diffraction | 1.704 | 2009-11-03 | ||||
| 137 | 3GPX|1|B+ 3GPX|1|C | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Interrogation Complex 4 (IC4) | X-ray diffraction | 1.78 | 2009-11-10 | ||||
| 138 | 1GU4|1|C+ 1GU4|1|D | 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3', 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3' | synthetic construct | Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment | X-ray diffraction | 1.8 | 2003-06-26 | |||
| 139 | 3G99|1|C+ 3G99|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:Pal complex-9 | X-ray diffraction | 1.81 | 2009-04-21 | ||||
| 140 | 3GQ3|1|B+ 3GQ3|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex | X-ray diffraction | 1.83 | 2009-11-10 | ||||
| 141 | 3GPY|1|B+ 3GPY|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*T*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Lesion Recognition Complex 3 (LRC3) | X-ray diffraction | 1.85 | 2009-11-10 | ||||
| 142 | 3G9I|1|C+ 3G9I|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA Binding domain: Pal complex-35 | X-ray diffraction | 1.85 | 2009-04-21 | ||||
| 143 | 1GTW|1|C+ 1GTW|1|D | 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3' | crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter | X-ray diffraction | 1.85 | 2004-02-06 | ||||
| 144 | 3GO8|1|B+ 3GO8|1|C | 5'-D(P*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*G)-3', 5'-D(*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*C)-3' | synthetic construct | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-loop deletion complex | X-ray diffraction | 1.89 | 2009-12-15 | |||
| 145 | 3GQ5|1|B+ 3GQ5|1|C | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*GP*GP*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Interrogation Complex 5 (IC5) | X-ray diffraction | 1.9 | 2009-11-10 | ||||
| 146 | 3G8U|1|C+ 3G8U|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3') | DNA binding domain:GilZ 16bp complex-5 | X-ray diffraction | 1.9 | 2009-04-21 | ||||
| 147 | 3G6U|1|C+ 3G6U|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:FKBP5 16bp complex-49 | X-ray diffraction | 1.9 | 2009-04-21 | ||||
| 148 | 3OJS|1|C+ 3OJS|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Snapshots of the large fragment of DNA polymerase I from Thermus Aquaticus processing C5 modified thymidines | X-ray diffraction | 1.9 | 2010-12-15 | ||||
| 149 | 3G6T|1|C+ 3G6T|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3') | GR gamma DNA-binding domain:FKBP5 16bp complex-34 | X-ray diffraction | 1.9 | 2009-04-21 | ||||
| 150 | 1G2F|1|A+ 1G2F|1|B+ 1G2F|1|D+ 1G2F|1|E | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-ray diffraction | 2 | 2001-09-07 | ||||
| 151 | 3OJU|1|C+ 3OJU|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies | X-ray diffraction | 2 | 2010-12-15 | ||||
| 152 | 3GP1|1|B+ 3GP1|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*CP**C)-3', 5'-D(P*TP*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3' | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-V222P complex | X-ray diffraction | 2.05 | 2009-11-10 | ||||
| 153 | 3G8X|1|C+ 3G8X|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:GilZ 16bp complex-65 | X-ray diffraction | 2.05 | 2009-04-21 | ||||
| 154 | 3G97|1|C+ 3G97|1|D | DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3') | GR DNA-binding domain:GilZ 16bp complex-9 | X-ray diffraction | 2.08 | 2009-04-21 | ||||
| 155 | 1PUE|1|A+ 1PUE|1|B | DNA (5'-D(*AP*AP*AP*AP*AP*GP*GP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*CP*CP*TP*TP*TP*T)-3') | synthetic construct | PU.1 ETS DOMAIN-DNA COMPLEX | X-ray diffraction | 2.1 | 1997-02-12 | |||
| 156 | 1PUE|1|C+ 1PUE|1|D | DNA (5'-D(*AP*AP*AP*AP*AP*GP*GP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*CP*CP*TP*TP*TP*T)-3') | synthetic construct | PU.1 ETS DOMAIN-DNA COMPLEX | X-ray diffraction | 2.1 | 1997-02-12 | |||
| 157 | 1GU5|1|C+ 1GU5|1|D | 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3', 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3' | synthetic construct | Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter | X-ray diffraction | 2.1 | 2003-06-26 | |||
| 158 | 1BY4|1|E+ 1BY4|1|F | DNA (5'-D(*C*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*A)-3') | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-ray diffraction | 2.1 | 2000-01-12 | ||||
| 159 | 1BY4|1|G+ 1BY4|1|H | DNA (5'-D(*C*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*A)-3') | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-ray diffraction | 2.1 | 2000-01-12 | ||||
| 160 | 2I9G|1|T+ 2I9G|1|P+ 2I9G|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | DNA Polymerase Beta with a Benzo[c]phenanthrene diol epoxide adducted guanine base | X-ray diffraction | 2.1 | 2006-10-24 | ||||
| 161 | 2ISO|1|T+ 2ISO|1|P+ 2ISO|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-difluoromethylene triphosphate | X-ray diffraction | 2.1 | 2007-01-30 | ||||
| 162 | 3GPP|1|B+ 3GPP|1|C | DNA (5'-D(P*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*C)-3'), DNA (5'-D(P*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-T224P complex | X-ray diffraction | 2.15 | 2009-11-10 | ||||
| 163 | 1G2D|1|A+ 1G2D|1|B+ 1G2D|1|D+ 1G2D|1|E | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) | X-ray diffraction | 2.2 | 2001-09-07 | ||||
| 164 | 1IG7|1|C+ 1IG7|1|B | 5'-D(P*TP*CP*CP*TP*TP*CP*AP*AP*TP*TP*AP*GP*TP*GP*AP*C)-3', 5'-D(*CP*AP*CP*TP*AP*AP*TP*TP*GP*AP*AP*GP*G)-3' | Msx-1 Homeodomain/DNA Complex Structure | X-ray diffraction | 2.2 | 2001-04-23 | ||||
| 165 | 2ISP|1|T+ 2ISP|1|P+ 2ISP|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate | X-ray diffraction | 2.2 | 2007-01-30 | ||||
| 166 | 1BPY|1|T+ 1BPY|1|P+ 1BPY|1|D | DNA (5'-D(*GP*TP*CP*GP*G)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*DOC)-3'), DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | synthetic construct | HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP | X-ray diffraction | 2.2 | 1997-06-16 | |||
| 167 | 3G6Q|1|C+ 3G6Q|1|D | DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:FKBP5 binding site complex-9 | X-ray diffraction | 2.26 | 2009-04-21 | ||||
| 168 | 1TRR|1|C+ 1TRR|1|I | DNA (5'-D(*AP*GP*CP*GP*TP*AP*CP*TP*AP*GP*TP*AP*CP*GP*CP*T)-3') | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-ray diffraction | 2.4 | 1993-10-21 | ||||
| 169 | 1TRR|1|F+ 1TRR|1|L | DNA (5'-D(*AP*GP*CP*GP*TP*AP*CP*TP*AP*GP*TP*AP*CP*GP*CP*T)-3') | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-ray diffraction | 2.4 | 1993-10-21 | ||||
| 170 | 1BPX|1|T+ 1BPX|1|P+ 1BPX|1|D | DNA (5'-D(*GP*TP*CP*GP*G)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | DNA POLYMERASE BETA/DNA COMPLEX | X-ray diffraction | 2.4 | 1997-06-16 | ||||
| 171 | 1CKT|1|B+ 1CKT|1|C | DNA (5'-D(*CP*CP*(5IU)P*CP*TP*CP*TP*GP*GP*AP*CP*CP*TP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*GP*TP*CP*CP*AP*GP*AP*GP*AP*GP*G)-3') | CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX | X-ray diffraction | 2.5 | 1999-06-30 | ||||
| 172 | 2P66|1|B+ 2P66|1|C+ 2P66|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*(3DR)P*GP*TP*CP*GP*G)-3') | Human DNA Polymerase beta complexed with tetrahydrofuran (abasic site) containing DNA | X-ray diffraction | 2.5 | 2007-04-10 | ||||
| 173 | 1CF7|1|C+ 1CF7|1|D | DNA (5'-D(*AP*TP*TP*TP*TP*CP*GP*CP*GP*CP*GP*GP*TP*TP*TP*T)-3'), DNA (5'-D(*TP*AP*AP*AP*AP*CP*CP*GP*CP*GP*CP*GP*AP*AP*AP*A)-3') | STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP | X-ray diffraction | 2.6 | 1999-04-02 | ||||
| 174 | 1BPZ|1|T+ 1BPZ|1|P+ 1BPZ|1|D | DNA (5'-D(*GP*TP*CP*GP*G)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA | X-ray diffraction | 2.6 | 1997-06-16 | ||||
| 175 | 3JR4|1|B+ 3JR4|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*G*CP*GP*TP*CP*CP*AP*(GX1)P*GP*TP*CP*TP*AP*CP*C)-3') | MutM interrogating an extrahelical G | X-ray diffraction | 2.601 | 2009-11-03 | ||||
| 176 | 1HJC|1|B+ 1HJC|1|C | DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3') | Homo sapiens | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-ray diffraction | 2.65 | 2001-03-09 | |||
| 177 | 1HJC|1|E+ 1HJC|1|F | DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3') | Homo sapiens | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-ray diffraction | 2.65 | 2001-03-09 | |||
| 178 | 1ECR|1|B+ 1ECR|1|C | DNA (5'-D(*TP*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3, DNA (5'-D(*TP*AP*GP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3 | ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA | X-ray diffraction | 2.7 | 1997-09-05 | ||||
| 179 | 1MQ3|1|T+ 1MQ3|1|P+ 1MQ3|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(*CP*CP*GP*AP*CP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine Template Paired with dCTP | X-ray diffraction | 2.8 | 2003-01-28 | ||||
| 180 | 1YFL|1|F+ 1YFL|1|G | 5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-ray diffraction | 3.09 | 2005-05-17 | ||||
| 181 | 1YFL|1|H+ 1YFL|1|I | 5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-ray diffraction | 3.09 | 2005-05-17 | ||||
| 182 | 1MQ2|1|T+ 1MQ2|1|P+ 1MQ2|1|D | 5'-D(P*GP*TP*CP*GP*G)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(2DA))-3', 5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP | X-ray diffraction | 3.1 | 2003-01-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3ISB|1|T+3ISB|1|P+3ISB|1|D | Binary complex of human DNA polymerase beta with a gapped DNA | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase | |
| 2 | 2F5S|1|B+2F5S|1|C | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1 | X-RAY DIFFRACTION | 2.35 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 3 | 3GP1|1|B+3GP1|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-V222P complex | X-RAY DIFFRACTION | 2.05 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 4 | 3JTG|1|B+3JTG|1|C | Crystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 5 | 2QL2|1|E+2QL2|1|F | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription |
| 6 | 1CF7|1|C+1CF7|1|D | STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP | X-RAY DIFFRACTION | 2.6 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription,winged helix/forkhead |
| 7 | 1CIT|1|B+1CIT|1|C | DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B | X-RAY DIFFRACTION | 2.7 | 16 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 8 | 3OJS|1|C+3OJS|1|B | Snapshots of the large fragment of DNA polymerase I from Thermus Aquaticus processing C5 modified thymidines | X-RAY DIFFRACTION | 1.9 | 16 | double helix,structure | enzyme,polymerase,transferase |
| 9 | 1D2I|1|C+1D2I|1|D | CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER | X-RAY DIFFRACTION | 1.7 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 10 | 2I9G|1|T+2I9G|1|P+2I9G|1|D | DNA Polymerase Beta with a Benzo[c]phenanthrene diol epoxide adducted guanine base | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,polymerase,transferase | |
| 11 | 2D45|1|G+2D45|1|H | Crystal structure of the MecI-mecA repressor-operator complex | X-RAY DIFFRACTION | 3.8 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 12 | 3GPP|1|B+3GPP|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-T224P complex | X-RAY DIFFRACTION | 2.15 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 13 | 2RDJ|1|D+2RDJ|1|C | Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 14 | 1BY4|1|E+1BY4|1|F | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-RAY DIFFRACTION | 2.1 | 16 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 15 | 3G9P|1|C+3G9P|1|D | GR DNA binding domain:Sgk 16bp complex-7 | X-RAY DIFFRACTION | 1.652 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 16 | 3G6U|1|C+3G6U|1|D | GR DNA-binding domain:FKBP5 16bp complex-49 | X-RAY DIFFRACTION | 1.9 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 17 | 1S0M|1|F+1S0M|1|E | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-RAY DIFFRACTION | 2.7 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 18 | 1LQ1|1|E+1LQ1|1|F | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-RAY DIFFRACTION | 2.3 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 19 | 1RYR|1|C+1RYR|1|B | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 2.28 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 20 | 3GPY|1|B+3GPY|1|C | Sequence-matched MutM Lesion Recognition Complex 3 (LRC3) | X-RAY DIFFRACTION | 1.85 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 21 | 1LQ1|1|G+1LQ1|1|H | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-RAY DIFFRACTION | 2.3 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 22 | 3GQC|1|J+3GQC|1|I | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase |
| 23 | 2C6Y|1|C+2C6Y|1|D | Crystal structure of interleukin enhancer-binding factor 1 bound to DNA | X-RAY DIFFRACTION | 2.4 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 24 | 3GQC|1|L+3GQC|1|K | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase |
| 25 | 1BY4|1|G+1BY4|1|H | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-RAY DIFFRACTION | 2.1 | 16 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 26 | 1RZR|1|B+1RZR|1|E | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-RAY DIFFRACTION | 2.8 | 16 | double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase |
| 27 | 1HJC|1|E+1HJC|1|F | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-RAY DIFFRACTION | 2.65 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,runt,transcription |
| 28 | 2I05|1|B+2I05|1|C | Escherichia Coli Replication Terminator Protein (Tus) Complexed With TerA DNA | X-RAY DIFFRACTION | 2.6 | 16 | double helix,structure | DNA replication/repair,regulatory |
| 29 | 1BPX|1|T+1BPX|1|P+1BPX|1|D | DNA POLYMERASE BETA/DNA COMPLEX | X-RAY DIFFRACTION | 2.4 | 16 | enzyme,polymerase,transferase | |
| 30 | 3N7B|1|D+3N7B|1|C | SgrAI bound to secondary site DNA and Ca(II) | X-RAY DIFFRACTION | 2.65 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 31 | 3JR4|1|B+3JR4|1|C | MutM interrogating an extrahelical G | X-RAY DIFFRACTION | 2.601 | 16 | double helix,structure | enzyme,hydrolase |
| 32 | 3F27|1|A+3F27|1|B | Structure of Sox17 Bound to DNA | X-RAY DIFFRACTION | 2.75 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),HMG box,other α-helix,regulatory,transcription |
| 33 | 1L2B|1|B+1L2B|1|C+1L2B|1|D | MutM (Fpg) DNA End-Product Structure | X-RAY DIFFRACTION | 2.4 | 16 | enzyme,hydrolase | |
| 34 | 3OA6|1|E+3OA6|1|F | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-RAY DIFFRACTION | 2.35 | 16 | chromatin,structural | |
| 35 | 3COA|1|A+3COA|1|B | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 36 | 2I06|1|B+2I06|1|C | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-RAY DIFFRACTION | 2.2 | 16 | double helix,structure | DNA replication/repair,regulatory |
| 37 | 3CO7|1|A+3CO7|1|B | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-RAY DIFFRACTION | 2.91 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 38 | 3OA6|1|C+3OA6|1|D | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-RAY DIFFRACTION | 2.35 | 16 | chromatin,structural | |
| 39 | 3CO7|1|D+3CO7|1|E | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-RAY DIFFRACTION | 2.91 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 40 | 2FVS|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.35 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 41 | 1YFL|1|F+1YFL|1|G | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-RAY DIFFRACTION | 3.09 | 16 | enzyme,methylase,transferase | |
| 42 | 2NTZ|1|W+2NTZ|1|Y | Structure of a ParB-DNA complex reveals a double B-box interaction | X-RAY DIFFRACTION | 3.35 | 16 | centromere,chromatin,structural | |
| 43 | 3G6Q|1|C+3G6Q|1|D | GR DNA binding domain:FKBP5 binding site complex-9 | X-RAY DIFFRACTION | 2.26 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 44 | 3G99|1|C+3G99|1|D | GR DNA binding domain:Pal complex-9 | X-RAY DIFFRACTION | 1.81 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 45 | 2ISO|1|T+2ISO|1|P+2ISO|1|D | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-difluoromethylene triphosphate | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,polymerase,transferase | |
| 46 | 3G9M|1|C+3G9M|1|D | GR DNA-binding domain:Sgk 16bp complex-44 | X-RAY DIFFRACTION | 1.61 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 47 | 3G9I|1|C+3G9I|1|D | GR DNA Binding domain: Pal complex-35 | X-RAY DIFFRACTION | 1.85 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 48 | 1YFH|1|F+1YFH|1|G | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-RAY DIFFRACTION | 3.01 | 16 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 49 | 1HJC|1|B+1HJC|1|C | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-RAY DIFFRACTION | 2.65 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,runt,transcription |
| 50 | 3MFK|1|C+3MFK|1|D | Ets1 complex with stromelysin-1 promoter DNA | X-RAY DIFFRACTION | 3 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 51 | 1MQ2|1|T+1MQ2|1|P+1MQ2|1|D | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP | X-RAY DIFFRACTION | 3.1 | 16 | enzyme,polymerase,transferase | |
| 52 | 3JR5|1|B+3JR5|1|C | MutM lesion recognition control complex with N174C crosslinking site | X-RAY DIFFRACTION | 1.704 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 53 | 1TRR|1|C+1TRR|1|I | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-RAY DIFFRACTION | 2.4 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor |
| 54 | 2QNF|1|E+2QNF|1|F | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-RAY DIFFRACTION | 3 | 16 | enzyme,hydrolase,nuclease | |
| 55 | 1CKT|1|B+1CKT|1|C | CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),HMG box,other α-helix,regulatory,transcription |
| 56 | 2WTU|1|E+2WTU|1|F | Crystal structure of Escherichia coli MutS in complex with a 16 basepair oligo containing an A.A mismatch. | X-RAY DIFFRACTION | 3.4 | 16 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
| 57 | 3G97|1|C+3G97|1|D | GR DNA-binding domain:GilZ 16bp complex-9 | X-RAY DIFFRACTION | 2.08 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 58 | 2NTZ|1|E+2NTZ|1|U | Structure of a ParB-DNA complex reveals a double B-box interaction | X-RAY DIFFRACTION | 3.35 | 16 | centromere,chromatin,structural | |
| 59 | 1PUE|1|A+1PUE|1|B | PU.1 ETS DOMAIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 60 | 1ZVV|1|O | Crystal structure of a ccpa-crh-dna complex | X-RAY DIFFRACTION | 2.98 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase |
| 61 | 3GQ3|1|B+3GQ3|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex | X-RAY DIFFRACTION | 1.83 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 62 | 3GPU|1|B+3GPU|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex | X-RAY DIFFRACTION | 1.62 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 63 | 3GO8|1|B+3GO8|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-loop deletion complex | X-RAY DIFFRACTION | 1.89 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 64 | 3G9O|1|C+3G9O|1|D | GR DNA-binding domain:Sgk 16bp complex-9 | X-RAY DIFFRACTION | 1.65 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 65 | 1BPZ|1|T+1BPZ|1|P+1BPZ|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA | X-RAY DIFFRACTION | 2.6 | 16 | enzyme,polymerase,transferase | |
| 66 | 3GQ4|1|B+3GQ4|1|C | Sequence-matched MutM Lesion Recognition Complex 5 (LRC5) | X-RAY DIFFRACTION | 1.7 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 67 | 1IG7|1|C+1IG7|1|B | Msx-1 Homeodomain/DNA Complex Structure | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription |
| 68 | 3FYL|1|C+3FYL|1|D | GR DNA binding domain:CGT complex | X-RAY DIFFRACTION | 1.63 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 69 | 1PUE|1|C+1PUE|1|D | PU.1 ETS DOMAIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 70 | 1ZVV|1|R | Crystal structure of a ccpa-crh-dna complex | X-RAY DIFFRACTION | 2.98 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase |
| 71 | 1G2F|1|A+1G2F|1|B+1G2F|1|D+1G2F|1|E | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-RAY DIFFRACTION | 2 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 72 | 3OQN|1|B+3OQN|1|E | Structure of ccpa-hpr-ser46-p-gntr-down cre | X-RAY DIFFRACTION | 3.3 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase |
| 73 | 1TRR|1|F+1TRR|1|L | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-RAY DIFFRACTION | 2.4 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor |
| 74 | 1TVA|1|T+1TVA|1|P+1TVA|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE THYMIDINE AND INCOMING CYTIDINE | X-RAY DIFFRACTION | 2.6 | 16 | enzyme,polymerase,transferase | |
| 75 | 3N78|1|D+3N78|1|C | SgrAI bound to Secondary Site DNA and Mg(II) | X-RAY DIFFRACTION | 2.95 | 16 | double helix,structure | enzyme,hydrolase,nuclease |
| 76 | 3C2L|1|T+3C2L|1|P+3C2L|1|D | Ternary complex of DNA POLYMERASE BETA with a C:DAPCPP mismatch in the active site | X-RAY DIFFRACTION | 2.6 | 16 | enzyme,polymerase,transferase | |
| 77 | 1GU5|1|C+1GU5|1|D | Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 78 | 1DFM|1|C+1DFM|1|D | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-RAY DIFFRACTION | 1.5 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
| 79 | 3GQ5|1|B+3GQ5|1|C | Sequence-matched MutM Interrogation Complex 5 (IC5) | X-RAY DIFFRACTION | 1.9 | 16 | double helix,structure | enzyme,hydrolase |
| 80 | 1XSD|1|B | Crystal structure of the BlaI repressor in complex with DNA | X-RAY DIFFRACTION | 2.7 | 16 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 81 | 3G8X|1|C+3G8X|1|D | GR DNA binding domain:GilZ 16bp complex-65 | X-RAY DIFFRACTION | 2.05 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 82 | 1JXL|1|T+1JXL|1|P | Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 83 | 3MBY|1|T+3MBY|1|P+3MBY|1|D | Ternary complex of DNA Polymerase BETA with template base A and 8oxodGTP in the active site with a dideoxy terminated primer | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase | |
| 84 | 2FMQ|1|B+2FMQ|1|C+2FMQ|1|D | Sodium in active site of DNA Polymerase Beta | X-RAY DIFFRACTION | 2.2 | 16 | enzyme,polymerase,transferase | |
| 85 | 3C2K|1|T+3C2K|1|P+3C2K|1|D | DNA POLYMERASE BETA with a gapped DNA substrate and DUMPNPP with Manganese in the active site | X-RAY DIFFRACTION | 2.4 | 16 | enzyme,polymerase,transferase | |
| 86 | 2FMS|1|T+2FMS|1|P+2FMS|1|D | DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase | |
| 87 | 3GDX|1|T+3GDX|1|P+3GDX|1|D | Dna polymerase beta with a gapped DND substrate and dTMP(CF2)PP | X-RAY DIFFRACTION | 2.2 | 16 | enzyme,polymerase,transferase | |
| 88 | 3LK9|1|T+3LK9|1|P+3LK9|1|D | DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P | X-RAY DIFFRACTION | 2.5 | 16 | enzyme,polymerase,transferase | |
| 89 | 2P66|1|B+2P66|1|C+2P66|1|D | Human DNA Polymerase beta complexed with tetrahydrofuran (abasic site) containing DNA | X-RAY DIFFRACTION | 2.5 | 16 | enzyme,polymerase,transferase | |
| 90 | 1TV9|1|T+1TV9|1|P+1TV9|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase | |
| 91 | 3GQC|1|H+3GQC|1|G | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase |
| 92 | 2FVR|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 93 | 3IGC|1|D+3IGC|1|B+3IGC|1|C | Smallpox virus topoisomerase-DNA transition state | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | enzyme,isomerase |
| 94 | 1MQ3|1|T+1MQ3|1|P+1MQ3|1|D | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine Template Paired with dCTP | X-RAY DIFFRACTION | 2.8 | 16 | enzyme,polymerase,transferase | |
| 95 | 2QL2|1|G+2QL2|1|H | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription |
| 96 | 2IVK|1|I+2IVK|1|J | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-RAY DIFFRACTION | 2.9 | 16 | double helix,structure | enzyme,hydrolase,nuclease |
| 97 | 1S0M|1|D+1S0M|1|C | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-RAY DIFFRACTION | 2.7 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 98 | 1G2D|1|A+1G2D|1|B+1G2D|1|D+1G2D|1|E | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription |
| 99 | 2D45|1|E+2D45|1|F | Crystal structure of the MecI-mecA repressor-operator complex | X-RAY DIFFRACTION | 3.8 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 100 | 1GTW|1|C+1GTW|1|D | crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter | X-RAY DIFFRACTION | 1.85 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 101 | 1RZR|1|H+1RZR|1|R | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-RAY DIFFRACTION | 2.8 | 16 | double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase |
| 102 | 1BPY|1|T+1BPY|1|P+1BPY|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP | X-RAY DIFFRACTION | 2.2 | 16 | enzyme,polymerase,transferase | |
| 103 | 3GPX|1|B+3GPX|1|C | Sequence-matched MutM Interrogation Complex 4 (IC4) | X-RAY DIFFRACTION | 1.78 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 104 | 3OJU|1|C+3OJU|1|B | Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies | X-RAY DIFFRACTION | 2 | 16 | double helix,structure | enzyme,polymerase,transferase |
| 105 | 3GQC|1|F+3GQC|1|E | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase |
| 106 | 3COA|1|D+3COA|1|E | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 107 | 1L3S|1|C+1L3S|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA. | X-RAY DIFFRACTION | 1.7 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 108 | 1L3T|1|C+1L3T|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue | X-RAY DIFFRACTION | 1.7 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 109 | 1L3U|1|C+1L3U|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 11 base pairs of duplex DNA following addition of a dTTP and a dATP residue. | X-RAY DIFFRACTION | 1.8 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 110 | 1NJY|1|C+1NJY|1|B | THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2 | 16 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 111 | 1L5U|1|C+1L5U|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 12 base pairs of duplex DNA following addition of a dTTP, a dATP, and a dCTP residue. | X-RAY DIFFRACTION | 1.95 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 112 | 1L3V|1|C+1L3V|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 15 base pairs of duplex DNA following addition of dTTP, dATP, dCTP, and dGTP residues. | X-RAY DIFFRACTION | 1.71 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 113 | 1GU4|1|C+1GU4|1|D | Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment | X-RAY DIFFRACTION | 1.8 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 114 | 3G8U|1|C+3G8U|1|D | DNA binding domain:GilZ 16bp complex-5 | X-RAY DIFFRACTION | 1.9 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 115 | 1DP7|1|D | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-RAY DIFFRACTION | 1.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 116 | 2ISP|1|T+2ISP|1|P+2ISP|1|D | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate | X-RAY DIFFRACTION | 2.2 | 16 | enzyme,polymerase,transferase | |
| 117 | 1ZVV|1|T | Crystal structure of a ccpa-crh-dna complex | X-RAY DIFFRACTION | 2.98 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase |
| 118 | 1YFL|1|H+1YFL|1|I | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-RAY DIFFRACTION | 3.09 | 16 | enzyme,methylase,transferase | |
| 119 | 2QNF|1|C+2QNF|1|D | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-RAY DIFFRACTION | 3 | 16 | enzyme,hydrolase,nuclease | |
| 120 | 1ECR|1|B+1ECR|1|C | ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.7 | 16 | double helix,structure | DNA replication/repair,regulatory |
| 121 | 1YFH|1|D+1YFH|1|E | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-RAY DIFFRACTION | 3.01 | 16 | B-form double helix,double helix,structure | enzyme,methylase,transferase |
| 122 | 3OQM|1|B+3OQM|1|E | structure of ccpa-hpr-ser46p-ackA2 complex | X-RAY DIFFRACTION | 2.96 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase |
| 123 | 3G6T|1|C+3G6T|1|D | GR gamma DNA-binding domain:FKBP5 16bp complex-34 | X-RAY DIFFRACTION | 1.9 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
| 124 | 3C2M|1|T+3C2M|1|P+3C2M|1|D | Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site | X-RAY DIFFRACTION | 2.15 | 16 | enzyme,polymerase,transferase | |
| 125 | 2WT7|1|C+2WT7|1|D | Crystal structure of the bZIP heterodimeric complex MafB:cFos bound to DNA | X-RAY DIFFRACTION | 2.3 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 126 | 3OHB|1|T+3OHB|1|P | Yeast DNA polymerase eta extending from an 8-oxoG lesion | X-RAY DIFFRACTION | 2 | 16 | double helix,structure | enzyme,polymerase,transferase |
| 127 | 1N4L|1|B+1N4L|1|D | A DNA analogue of the polypurine tract of HIV-1 | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase | |
| 128 | 2VE9|1|I+2VE9|1|J | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-RAY DIFFRACTION | 1.9 | 16 | B-form double helix,double helix,structure | cell cycle,regulatory |
| 129 | 3LAP|1|G+3LAP|1|H | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-RAY DIFFRACTION | 2.15 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 130 | 3JPP|1|T+3JPP|1|P+3JPP|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-MonoMethyl Methylene triphosphate | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,polymerase,transferase | |
| 131 | 1NKE|1|C+1NKE|1|B | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-RAY DIFFRACTION | 1.8 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 132 | 2FVQ|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.3 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 133 | 2VE9|1|K+2VE9|1|L | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-RAY DIFFRACTION | 1.9 | 16 | B-form double helix,double helix,structure | cell cycle,regulatory |
| 134 | 2FVP|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.25 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 135 | 1L1T|1|B+1L1T|1|C | MutM (Fpg) Bound to Abasic-Site Containing DNA | X-RAY DIFFRACTION | 1.8 | 16 | double helix,structure | enzyme,hydrolase |
| 136 | 3OSP|1|T | Structure of rev1 | X-RAY DIFFRACTION | 2.5 | 25 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase |
| 137 | 3LAJ|1|I+3LAJ|1|J | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-RAY DIFFRACTION | 2.306 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 138 | 3MFH|1|T+3MFH|1|P | DNA Polymerase Eta in Complex With Undamaged DNA | X-RAY DIFFRACTION | 2 | 16 | double helix,structure | enzyme,polymerase,transferase |
| 139 | 2F5P|1|C+2F5P|1|D | MutM crosslinked to undamaged DNA sampling A:T base pair IC2 | X-RAY DIFFRACTION | 2 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 140 | 3CO6|1|A+3CO6|1|B | Crystal Structure of FoxO1 DBD Bound to DBE1 DNA | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 141 | 2EWJ|1|B+2EWJ|1|C | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-RAY DIFFRACTION | 2.7 | 16 | double helix,structure | DNA replication/repair,regulatory |
| 142 | 2GEQ|1|C+2GEQ|1|D | Crystal Structure of a p53 Core Dimer Bound to DNA | X-RAY DIFFRACTION | 2.3 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription |
| 143 | 3JPS|1|T+3JPS|1|P+3JPS|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase | |
| 144 | 2F5O|1|B+2F5O|1|C | MutM crosslinked to undamaged DNA sampling G:C base pair IC3 | X-RAY DIFFRACTION | 2.05 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 145 | 3JPR|1|T+3JPR|1|P+3JPR|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dimethyl methylene triphosphate | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,polymerase,transferase | |
| 146 | 1L1Z|1|B+1L1Z|1|C | MutM (Fpg) Covalent-DNA Intermediate | X-RAY DIFFRACTION | 1.7 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 147 | 1NJZ|1|C+1NJZ|1|B | CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2 | 16 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase |
| 148 | 3LAJ|1|G+3LAJ|1|H | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-RAY DIFFRACTION | 2.306 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 149 | 3IAY|1|T+3IAY|1|P | Ternary complex of DNA polymerase delta | X-RAY DIFFRACTION | 2 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 150 | 3M8R|1|C+3M8R|1|B | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP | X-RAY DIFFRACTION | 2 | 16 | double helix,structure | enzyme,polymerase,transferase |
| 151 | 3LWL|1|C+3LWL|1|B | Structure of Klenow fragment of Taq polymerase in complex with an abasic site | X-RAY DIFFRACTION | 2.25 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 152 | 3ISC|1|T+3ISC|1|P+3ISC|1|D | Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase | |
| 153 | 2HW3|1|C+2HW3|1|B | T:O6-methyl-guanine pair in the polymerase postinsertion site (-1 basepair position) | X-RAY DIFFRACTION | 1.98 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 154 | 1N48|1|C+1N48|1|B | Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion | X-RAY DIFFRACTION | 2.2 | 16 | enzyme,polymerase,transferase | |
| 155 | 2NOB|1|B+2NOB|1|C | Structure of catalytically inactive H270A human 8-oxoguanine glycosylase crosslinked to 8-oxoguanine DNA | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 156 | 3JPN|1|T+3JPN|1|P+3JPN|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dichloro methylene triphosphate | X-RAY DIFFRACTION | 2.15 | 16 | enzyme,polymerase,transferase | |
| 157 | 2E43|1|C+2E43|1|D | Crystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to A High Affinity DNA fragment | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 158 | 1NK4|1|C+1NK4|1|B | GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 1.6 | 16 | enzyme,polymerase,transferase | |
| 159 | 3BS1|1|B+3BS1|1|C | Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding | X-RAY DIFFRACTION | 1.6 | 16 | B-form double helix,double helix,structure | regulatory,transcription |
| 160 | 3M8S|1|C+3M8S|1|B | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP | X-RAY DIFFRACTION | 2.2 | 16 | double helix,structure | enzyme,polymerase,transferase |
| 161 | 2AQ4|1|T+2AQ4|1|P | Ternary complex of the catalytic core of REV1 with DNA and dCTP. | X-RAY DIFFRACTION | 2.32 | 16 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase |
| 162 | 3LAP|1|I+3LAP|1|J | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-RAY DIFFRACTION | 2.15 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 163 | 2F5Q|1|B+2F5Q|1|C | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2 | X-RAY DIFFRACTION | 2.35 | 16 | double helix,structure | enzyme,hydrolase |
| 164 | 2HHV|1|C+2HHV|1|B | T:O6-methyl-guanine in the polymerase-2 basepair position | X-RAY DIFFRACTION | 1.55 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 165 | 3ISD|1|T+3ISD|1|P+3ISD|1|D | Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch | X-RAY DIFFRACTION | 2.6 | 16 | enzyme,polymerase,transferase | |
| 166 | 2PXI|1|T+2PXI|1|P+2PXI|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monofluoromethylene triphosphate | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,polymerase,transferase | |
| 167 | 2HHU|1|C+2HHU|1|B | C:O6-methyl-guanine in the polymerase postinsertion site (-1 basepair position) | X-RAY DIFFRACTION | 1.8 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 168 | 1L2D|1|B+1L2D|1|C | MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex | X-RAY DIFFRACTION | 2 | 16 | double helix,structure | enzyme,hydrolase |
| 169 | 3JPT|1|T+3JPT|1|P+3JPT|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate | X-RAY DIFFRACTION | 2.15 | 16 | enzyme,polymerase,transferase | |
| 170 | 2HHT|1|C+2HHT|1|B | C:O6-methyl-guanine pair in the polymerase-2 basepair position | X-RAY DIFFRACTION | 2.05 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 171 | 3LAP|1|K+3LAP|1|L | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-RAY DIFFRACTION | 2.15 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 172 | 1L2C|1|B+1L2C|1|C | MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex | X-RAY DIFFRACTION | 2.2 | 16 | double helix,structure | enzyme,hydrolase |
| 173 | 2FMP|1|T+2FMP|1|P+2FMP|1|D | DNA Polymerase beta with a terminated gapped DNA substrate and ddCTP with sodium in the catalytic site | X-RAY DIFFRACTION | 1.65 | 16 | enzyme,polymerase,transferase | |
| 174 | 3ERE|1|A+3ERE|1|B | Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator | X-RAY DIFFRACTION | 2.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 175 | 1NK5|1|C+1NK5|1|B | ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2.1 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
| 176 | 1ZJM|1|T+1ZJM|1|P+1ZJM|1|D | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,polymerase,transferase | |
| 177 | 2F5N|1|B+2F5N|1|C | MutM crosslinked to undamaged DNA sampling A:T base pair IC1 | X-RAY DIFFRACTION | 2 | 16 | B-form double helix,double helix,structure | enzyme,hydrolase |
| 178 | 3JPQ|1|T+3JPQ|1|P+3JPQ|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate | X-RAY DIFFRACTION | 1.9 | 16 | enzyme,polymerase,transferase | |
| 179 | 3LAJ|1|K+3LAJ|1|L | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-RAY DIFFRACTION | 2.306 | 16 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 180 | 1ZJN|1|T+1ZJN|1|P+1ZJN|1|D | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP | X-RAY DIFFRACTION | 2.61 | 16 | enzyme,polymerase,transferase | |
| 181 | 2E42|1|C+2E42|1|D | Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment | X-RAY DIFFRACTION | 1.8 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription |
| 182 | 3JPO|1|T+3JPO|1|P+3JPO|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate | X-RAY DIFFRACTION | 2 | 16 | enzyme,polymerase,transferase |
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