Equivalence class DNA_4.0_70948.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1NH2|1|E+ 1NH2|1|F (rep) | 5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3', 5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3' | Crystal structure of a yeast TFIIA/TBP/DNA complex | X-ray diffraction | 1.9 | 2003-10-21 | ||||
2 | 1YTF|1|E+ 1YTF|1|F | DNA (5'-D(*TP*GP*TP*AP*TP*GP*TP*AP*TP*AP*TP*AP*AP*AP*AP*C)-3'), DNA (5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3') | YEAST TFIIA/TBP/DNA COMPLEX | X-ray diffraction | 2.5 | 1996-06-20 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 1NH2|1|E+1NH2|1|F | Crystal structure of a yeast TFIIA/TBP/DNA complex | X-RAY DIFFRACTION | 1.9 | 16 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription |
2 | 1YTF|1|E+1YTF|1|F | YEAST TFIIA/TBP/DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 16 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription |
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