Equivalence class DNA_4.0_68651.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3JSO|1|C+ 3JSO|1|D (rep) | DNA (5'-D(*TP*AP*TP*AP*CP*TP*GP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*CP*AP*GP*TP*A)-3') | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-ray diffraction | 2.29 | 2010-08-18 | ||||
| 2 | 3JSP|1|C+ 3JSP|1|D | DNA (5'-D(*TP*AP*TP*AP*CP*TP*GP*TP*AP*TP*GP*CP*GP*CP*AP*TP*AP*CP*AP*GP*TP*A)-3') | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-ray diffraction | 2.9 | 2010-08-18 | ||||
| 3 | 1BDT|1|E+ 1BDT|1|F | DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*TP*AP*TP*CP*AP*T)-3'), DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*TP*AP*CP*TP*AP*T)-3') | WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX | X-ray diffraction | 2.5 | 1999-02-16 | ||||
| 4 | 1PAR|1|E+ 1PAR|1|F | DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*T P*AP*TP*CP*AP*T)- 3'), DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*T P*AP*CP*TP*AP*T)- 3') | DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE | X-ray diffraction | 2.6 | 1994-07-31 | ||||
| 5 | 1BDV|1|E+ 1BDV|1|F | DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*TP*AP*TP*CP*AP*T)-3'), DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*TP*AP*CP*TP*AP*T)-3') | ARC FV10 COCRYSTAL | X-ray diffraction | 2.8 | 1999-01-06 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1PAR|1|E+1PAR|1|F | DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE | X-RAY DIFFRACTION | 2.6 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
| 2 | 1BDT|1|E+1BDT|1|F | WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
| 3 | 1BDV|1|E+1BDV|1|F | ARC FV10 COCRYSTAL | X-RAY DIFFRACTION | 2.8 | 22 | double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription |
| 4 | 3JSP|1|C+3JSP|1|D | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-RAY DIFFRACTION | 2.9 | 22 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
| 5 | 3JSO|1|C+3JSO|1|D | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-RAY DIFFRACTION | 2.29 | 22 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
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