Equivalence class DNA_4.0_67779.1 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2BCQ|1|T+ 2BCQ|1|P+ 2BCQ|1|D (rep) | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*TP*TP*AP*CP*TP*G)-3' | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dtmp | X-ray diffraction | 1.65 | 2006-03-07 | ||||
2 | 2BCR|1|T+ 2BCR|1|P+ 2BCR|1|D | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*AP*TP*AP*CP*TP*G)-3' | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp | X-ray diffraction | 1.75 | 2006-03-07 | ||||
3 | 2BCV|1|T+ 2BCV|1|P+ 2BCV|1|D | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*(O2C))-3', 5'-D(*CP*GP*GP*CP*AP*GP*TP*TP*AP*CP*TP*G)-3' | DNA polymerase lambda in complex with Dttp and a DNA duplex containing an unpaired Dtmp | X-ray diffraction | 2 | 2006-03-07 | ||||
4 | 2BCS|1|T+ 2BCS|1|P+ 2BCS|1|D | 5'-D(*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*CP*TP*AP*CP*TP*G)-3' | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dcmp | X-ray diffraction | 2.2 | 2006-03-07 | ||||
5 | 2BCU|1|T+ 2BCU|1|P+ 2BCU|1|D | 5'-D(P*GP*CP*CP*G)-3', 5'-D(*CP*AP*GP*TP*TP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*AP*TP*AP*CP*TP*G)-3' | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch | X-ray diffraction | 2.2 | 2006-03-07 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 2BCU|1|T+2BCU|1|P+2BCU|1|D | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch | X-RAY DIFFRACTION | 2.2 | 12 | enzyme,polymerase,transferase | |
2 | 2BCV|1|T+2BCV|1|P+2BCV|1|D | DNA polymerase lambda in complex with Dttp and a DNA duplex containing an unpaired Dtmp | X-RAY DIFFRACTION | 2 | 12 | enzyme,polymerase,transferase | |
3 | 2BCQ|1|T+2BCQ|1|P+2BCQ|1|D | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dtmp | X-RAY DIFFRACTION | 1.65 | 12 | enzyme,polymerase,transferase | |
4 | 2BCR|1|T+2BCR|1|P+2BCR|1|D | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp | X-RAY DIFFRACTION | 1.75 | 12 | enzyme,polymerase,transferase | |
5 | 2BCS|1|T+2BCS|1|P+2BCS|1|D | DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dcmp | X-RAY DIFFRACTION | 2.2 | 12 | enzyme,polymerase,transferase |
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